View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_84 (Length: 339)
Name: NF1149_low_84
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 28651296 - 28651068
Alignment:
| Q |
11 |
agaatatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28651296 |
agaaaatggagtaacaaaagttccacgcatgttctattgtgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
28651197 |
T |
|
| Q |
111 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28651196 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaa |
28651097 |
T |
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| Q |
211 |
taaatcatggaattccagttcatgttttg |
239 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28651096 |
taaatcatggaattccagttcatgttttg |
28651068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 28642435 - 28642204
Alignment:
| Q |
11 |
agaatatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
110 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||| ||||||||| |||||| ||| | ||| | ||||| |||| ||||||| ||||||||| |
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| T |
28642435 |
agaaaatggagtaacaaaagttccacacatgttctattgtgaacaatctagtatcaatgatgtttcagtgaatgaatcaaattcaaagctaagtatccct |
28642336 |
T |
|
| Q |
111 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28642335 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaa |
28642236 |
T |
|
| Q |
211 |
taaatcatggaattccagttcatgttttggat |
242 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28642235 |
taaatcatggaattccagttcatgttttggat |
28642204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 28671018 - 28670802
Alignment:
| Q |
11 |
agaatatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
110 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||| | ||||| |||| ||||||||||| ||||| |
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| T |
28671018 |
agaaaatggagtaacaaaagttccacgcatgttctattgtgaacaatctaatatcaatcatggttcagtaaatgaatcaaattcaaagcttagtgtccct |
28670919 |
T |
|
| Q |
111 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa |
210 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
28670918 |
acaattgacttaacaggaatccatgatgatcctgttttgagagatgaagttgtaagaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaa |
28670819 |
T |
|
| Q |
211 |
taaatcatggaattcca |
227 |
Q |
| |
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||||||||||||||||| |
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| T |
28670818 |
taaatcatggaattcca |
28670802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 28675162 - 28674946
Alignment:
| Q |
11 |
agaatatggagtaacaaaagttccacgcatgttctatcacgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccct |
110 |
Q |
| |
|
|||| |||| || |||||||||||||| |||||| || ||||||||| ||||||| || || |||||||| |||| ||||||||| |||||| |
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| T |
28675162 |
agaaaatggtgtcacaaaagttccacgtatgttccattgtgaacaatctaatatcaatgatctctcaatcagtgaatcaaatttaaagcttagcatccct |
28675063 |
T |
|
| Q |
111 |
acaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggattctttcaagtaa |
210 |
Q |
| |
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||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| | |
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| T |
28675062 |
acaattgacttaacaggaatccacgatgatcctcttttgagagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtga |
28674963 |
T |
|
| Q |
211 |
taaatcatggaattcca |
227 |
Q |
| |
|
||||||||||||||||| |
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| T |
28674962 |
taaatcatggaattcca |
28674946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 28691549 - 28691407
Alignment:
| Q |
100 |
ttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgagaaatggggatt |
199 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||| ||||||| |||||||| |
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| T |
28691549 |
ttagtatccctacaattgacctaacaggaatccatgatgatcttgttttgagagatgaagctgtgagaaaagttgaaaatgcatgtgagaagtggggatt |
28691450 |
T |
|
| Q |
200 |
ctttcaagtaataaatcatggaattccagttcatgttttggat |
242 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
28691449 |
ctttcaagtaataaatcatggaatttcagctcatgttttggat |
28691407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 28696445 - 28696307
Alignment:
| Q |
89 |
aaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcaagtgag |
188 |
Q |
| |
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|||| ||||||| |||||||| |||||||| ||| |||||||||| |||||| || ||||| |||||||||||||||| || || |||||||||||||| |
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| T |
28696445 |
aaattcaaagctaagtatcccaccaattgacctaacaggaatccataatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaagtgag |
28696346 |
T |
|
| Q |
189 |
aaatggggattctttcaagtaataaatcatggaattcca |
227 |
Q |
| |
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| T |
28696345 |
aattggggattctttcaagtaataaatcatggaattcca |
28696307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 28741621 - 28741514
Alignment:
| Q |
83 |
tgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgca |
182 |
Q |
| |
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||||| |||| ||||| ||||||||| || |||||| ||| ||||||||||||||||| || |||||||||| |||||||||| || || ||||| || |
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| T |
28741621 |
tgaatgaaattcaaagattagtatccgtagaattgatttaccaggaatccatgatgatcttgttttgagagatacagttgtgagaaaagttcaaaattca |
28741522 |
T |
|
| Q |
183 |
agtgagaa |
190 |
Q |
| |
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||||||| |
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|
| T |
28741521 |
tgtgagaa |
28741514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 28733457 - 28733368
Alignment:
| Q |
55 |
aatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatccatgatgatcctg |
144 |
Q |
| |
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||||| |||||||| ||| | ||| || ||||| |||| ||||| |||||||||||| |||||| ||| |||||||||||||||||||| |
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| T |
28733457 |
aatctaatatcaacgatgtttcagtcaatgaataaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgatcctg |
28733368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 28717651 - 28717610
Alignment:
| Q |
201 |
tttcaagtaataaatcatggaattccagttcatgttttggat |
242 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||| |
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| T |
28717651 |
tttcaagtaataaatcatggaatttcaactcatgttttggat |
28717610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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