View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_9 (Length: 654)
Name: NF1149_low_9
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 391 - 650
Target Start/End: Complemental strand, 36544957 - 36544697
Alignment:
| Q |
391 |
tttatcagaacaaatagttcatgtgttttcttctaaaagaacctact-ttttggccttaccacattagcgat---gtaacaaaaataaaataaaatgcag |
486 |
Q |
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| T |
36544957 |
tttatcggaacaaatagttcatgtgttt-cttctaaaagaacctactcttttggccttaccacattagcgatattgtaacaaaaagaaaa--aaatgcag |
36544861 |
T |
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| Q |
487 |
tgtaaccaaaagacattagcgatatgaaatttgaaatgtcggaacaaataaaaaatattaaaaccagaatttatgacaaatagcctatgtctacctctaa |
586 |
Q |
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| T |
36544860 |
tgtaaccaaaagacattagcgatatgaaatttgaaatgtcggaacaaataaaaaatattaaaaccagaatttatgacaaatagcctatgtctacctctaa |
36544761 |
T |
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| Q |
587 |
ttgcaattcaattggtgattcgcatctactgtattaataattttaattgactttcatctcactc |
650 |
Q |
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| T |
36544760 |
ttgcaattcaattggtgattcgcatctactgtattaataattttaattgactttgatctcactc |
36544697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 36545024 - 36544952
Alignment:
| Q |
293 |
gtactaaatattcaatgttgtatttgtcaataaataacctttactgcttaatacctttatttggccctttatc |
365 |
Q |
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| T |
36545024 |
gtactaaatattcaatgttgtatttgtcaataaataacctttactgcttaatacctttatttggccctttatc |
36544952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 7e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 16102627 - 16102810
Alignment:
| Q |
12 |
aatatcacaaaaggatggatccagtagataaactattggacactatgcagagtcgtagattagatcatggatcatatatataatccactttccgttagag |
111 |
Q |
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| T |
16102627 |
aatatcacaaaag-atggatctaatagatagattattaggcactatgcagagtcgtagattagatcatggatcatatatataatccactctccgctagag |
16102725 |
T |
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| Q |
112 |
tatgtttggttctgcaatagttggttccagtctggaaattgtttcaaagatagtaaattgtgcttttaatatggtcaagtaggtc |
196 |
Q |
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| T |
16102726 |
taattttggttctgcaatagttggttccattcttgaaattgtttcaaagatagtaaattttgtgtttaatatggttaagtaggtc |
16102810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 14655964 - 14656080
Alignment:
| Q |
79 |
tggatcatatatataatccactttccgttagagtatgtttggttctgcaatagttggttccagtctggaaattgtttcaaagatagtaaattgtgctttt |
178 |
Q |
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| T |
14655964 |
tggatcatatatataatccactttctgttagagtatttttggttctgcaatatttggttccactctggaaattgtttcaaagatagtaaattgtgctttt |
14656063 |
T |
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| Q |
179 |
aatatggtcaagtaggt |
195 |
Q |
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| T |
14656064 |
aatatggtcaagtaggt |
14656080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 27004663 - 27004736
Alignment:
| Q |
123 |
ctgcaatagttggttccagtctggaaattgtttcaaagatagtaaattgtgcttttaatatggtcaagtaggtc |
196 |
Q |
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| T |
27004663 |
ctgcaatagttggttccacttttgaaattgtttcaaagatagtaaattgtgcgtttaatatggtcaagtaggtc |
27004736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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