View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_91 (Length: 332)
Name: NF1149_low_91
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 55 - 325
Target Start/End: Original strand, 2972315 - 2972585
Alignment:
| Q |
55 |
gagcaattgatatcttaacttgttaaatgcaacttgttaaatttttatgtttgatggagactagggttttaaataaaggtctgcagctgcaatctgggtc |
154 |
Q |
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| T |
2972315 |
gagcaattgatatcttaacttgttaaatgcaactagttaaatttgtatgtttgatggagactagggttttaaataaaggtctgcagccgcaatctgggtc |
2972414 |
T |
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| Q |
155 |
gcgacataacannnnnnnatgttgagagattgccagattaccgttactgataacatcttgatagtcaagatagtaacgtcttgatagtcaagatacgatc |
254 |
Q |
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| T |
2972415 |
gcgacataacatttttttatgttgagagattcccagattaccgttactgataacaacttgatagtcaagatagtaacgtcttgatagtcaagatacgatc |
2972514 |
T |
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| Q |
255 |
ttatacatgattatgcgatgaaatttacaaagcaaagtacatcataatcaagttagatatgatattcttgg |
325 |
Q |
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| T |
2972515 |
ttatacatgattatgcgatgaaatttacaaagcaaagtacatcacaatcaagttagatatgattttcttgg |
2972585 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 25160265 - 25160233
Alignment:
| Q |
205 |
taacatcttgatagtcaagatagtaacgtcttg |
237 |
Q |
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| T |
25160265 |
taacatcttgatagtcaagatagtaacgacttg |
25160233 |
T |
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