View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_93 (Length: 317)
Name: NF1149_low_93
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 288
Target Start/End: Complemental strand, 46951629 - 46951370
Alignment:
| Q |
29 |
atcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46951629 |
atcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtg |
46951530 |
T |
|
| Q |
129 |
atggaacttcttattggaatttctttaatacatggtctgaaatatttcaaggccaaggccatgatgttcgcatttcacgccaaccctcacacaatcgttg |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46951529 |
atggaacttcttattggaatttctttaatacatggtctgaaatatttcaaggccaaggccatgatgttcgcatttcacgccaaccctcacacattcgttg |
46951430 |
T |
|
| Q |
229 |
gtttccagaaggttatggtccactgatcaatcttccattcaaacatcatgacgagattat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46951429 |
gtttccagaaggttatggtccactgatcaatcttccattcaaacatcatgacgagattat |
46951370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 46958822 - 46958673
Alignment:
| Q |
29 |
atcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtg |
128 |
Q |
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|||||||||||||||||||||||||| |||||||| || |||||||| |||||||| ||||||||||||||||||||||| ||||||| | |||||||| |
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| T |
46958822 |
atcaaccacgacggtcacaccatgccattgttatcaattcaagtcacagagctagtggatggtgttttcataggttgttccctgaatcattgtattggtg |
46958723 |
T |
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| Q |
129 |
atggaacttcttattggaatttctttaatacatggtctgaaatatttcaa |
178 |
Q |
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|||| || |||| |||||||| ||||||| ||||||||| ||||||||| |
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| T |
46958722 |
atggtacctctttctggaatttttttaatatatggtctgagatatttcaa |
46958673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 46955954 - 46955816
Alignment:
| Q |
41 |
ggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatggaacttctt |
140 |
Q |
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|||||||||||||||||| ||||||| |||||||| || ||| ||||||||||||||||||||||| ||||| || | |||||||||||| ||||||| |
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| T |
46955954 |
ggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatgggacttctt |
46955855 |
T |
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| Q |
141 |
attggaatttctttaatacatggtctgaaatatttcaag |
179 |
Q |
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|||||||||||| |||| |||||||||||||| ||||| |
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| T |
46955854 |
tttggaatttcttcaatatatggtctgaaatatatcaag |
46955816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 46995885 - 46995737
Alignment:
| Q |
30 |
tcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtga |
129 |
Q |
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||||||| || || ||||||||| | ||||| ||||| ||||||||||| || |||| |||||||||||||||||||| ||||| ||| | ||||||| |
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| T |
46995885 |
tcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtga |
46995786 |
T |
|
| Q |
130 |
tggaacttcttattggaatttctttaatacatggtctgaaatatttcaa |
178 |
Q |
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|
||||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
46995785 |
tggaactgcttattggaatttctttaatacactttctgagatatttcaa |
46995737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 47001823 - 47001677
Alignment:
| Q |
32 |
aaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtgatg |
131 |
Q |
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||||| || |||||||||||| | ||||| || || ||||||||||| || | ||||||||||||||||||||||| |||||||| | ||||||||||| |
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| T |
47001823 |
aaccatgatggtcacaccatgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattggtgatg |
47001724 |
T |
|
| Q |
132 |
gaacttcttattggaatttctttaatacatggtctgaaatatttcaa |
178 |
Q |
| |
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|||| |||||||||||||||| || |||| || || ||||||||| |
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| T |
47001723 |
gaacagcttattggaatttcttcaacacattttcggagatatttcaa |
47001677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 46981057 - 46980909
Alignment:
| Q |
30 |
tcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtga |
129 |
Q |
| |
|
||||||| || ||||| |||||| | ||||| || || ||||||||||| ||||||||||||||||||| |||||||| |||||||| | | || |||| |
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| T |
46981057 |
tcaaccatgatggtcataccatgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcattgtctttgtga |
46980958 |
T |
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| Q |
130 |
tggaacttcttattggaatttctttaatacatggtctgaaatatttcaa |
178 |
Q |
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|
|||||| |||||||||||||||| || |||| ||||| ||||||||| |
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| T |
46980957 |
tggaacagcttattggaatttcttcaacacattttctgagatatttcaa |
46980909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 46998133 - 46997985
Alignment:
| Q |
30 |
tcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatattggtga |
129 |
Q |
| |
|
||||||| || || ||||||||| | ||||| ||||| ||||| ||||| || | ||| ||||||| ||||||||||| |||||||| | ||||||||| |
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| T |
46998133 |
tcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtattggtga |
46998034 |
T |
|
| Q |
130 |
tggaacttcttattggaatttctttaatacatggtctgaaatatttcaa |
178 |
Q |
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|
||||||| |||||||||||||||||| ||| ||||| ||||||||| |
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|
| T |
46998033 |
tggaactggttattggaatttctttaactcattttctgagatatttcaa |
46997985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 46975014 - 46974922
Alignment:
| Q |
86 |
gatggtgttttcataggttgttctatgaatcactatattggtgatggaacttcttattggaatttctttaatacatggtctgaaatatttcaa |
178 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| | ||| |||||||| ||| |||||||||||||||||| ||| ||||| ||||||||| |
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| T |
46975014 |
gatggtgtttttataggttgttccatgaatcattgtataggtgatgggactggttattggaatttctttaactcattttctgagatatttcaa |
46974922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 46997942 - 46997871
Alignment:
| Q |
218 |
cacaatcgttggtttccagaaggttatggtccactgatcaatcttccattcaaacatcatgacgagattatt |
289 |
Q |
| |
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|||||| | |||||||||||||||||||||||| | |||| ||||| |||||||||||||||||| ||||| |
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| T |
46997942 |
cacaatagatggtttccagaaggttatggtccaatcatcagccttcctttcaaacatcatgacgagtttatt |
46997871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 46980859 - 46980810
Alignment:
| Q |
227 |
tggtttccagaaggttatggtccactgatcaatcttccattcaaacatca |
276 |
Q |
| |
|
||||||||| |||||||||||||| | ||||| ||||||||||||||||| |
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| T |
46980859 |
tggtttccacaaggttatggtccaattatcaaccttccattcaaacatca |
46980810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 46995682 - 46995611
Alignment:
| Q |
218 |
cacaatcgttggtttccagaaggttatggtccactgatcaatcttccattcaaacatcatgacgagattatt |
289 |
Q |
| |
|
|||||| | |||||||| ||||| ||||||||| | ||||| ||||| ||||||||||| |||||| ||||| |
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| T |
46995682 |
cacaatagatggtttcctgaaggctatggtccaattatcaaccttcctttcaaacatcacgacgagtttatt |
46995611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 46974879 - 46974821
Alignment:
| Q |
218 |
cacaatcgttggtttccagaaggttatggtccactgatcaatcttccattcaaacatca |
276 |
Q |
| |
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|||||| | ||||||||| ||||||||||||| | ||||| ||||||||||||||||| |
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|
| T |
46974879 |
cacaatagatggtttccacaaggttatggtccgattatcaaccttccattcaaacatca |
46974821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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