View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_94 (Length: 314)

Name: NF1149_low_94
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_low_94
NF1149_low_94
[»] chr1 (5 HSPs)
chr1 (10-314)||(34668663-34668967)
chr1 (163-219)||(24460313-24460369)
chr1 (268-314)||(1662501-1662546)
chr1 (269-314)||(4276735-4276780)
chr1 (237-301)||(17420142-17420207)
[»] chr2 (2 HSPs)
chr2 (163-217)||(1830143-1830197)
chr2 (237-301)||(31740025-31740091)
[»] chr5 (7 HSPs)
chr5 (237-313)||(35135728-35135804)
chr5 (168-219)||(14706201-14706252)
chr5 (243-301)||(37063146-37063205)
chr5 (161-215)||(4619813-4619867)
chr5 (169-219)||(10771806-10771856)
chr5 (169-219)||(19177547-19177597)
chr5 (166-214)||(42034167-42034215)
[»] chr4 (5 HSPs)
chr4 (237-301)||(21593078-21593142)
chr4 (157-206)||(25571374-25571423)
chr4 (166-218)||(19394864-19394916)
chr4 (163-219)||(52333700-52333756)
chr4 (237-301)||(53155204-53155267)
[»] chr3 (4 HSPs)
chr3 (166-219)||(22667505-22667558)
chr3 (166-219)||(22724144-22724197)
chr3 (166-219)||(26990769-26990822)
chr3 (164-216)||(31337325-31337377)
[»] chr7 (3 HSPs)
chr7 (241-301)||(33894562-33894622)
chr7 (163-195)||(259710-259742)
chr7 (244-311)||(46223146-46223212)
[»] chr8 (2 HSPs)
chr8 (172-219)||(2487929-2487976)
chr8 (163-191)||(43717846-43717874)
[»] chr6 (3 HSPs)
chr6 (237-314)||(6310290-6310368)
chr6 (172-213)||(4308885-4308926)
chr6 (243-299)||(7354145-7354202)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 34668967 - 34668663
Alignment:
Q  10 attattctcaaatactttttcagattaaatgtgatacagatttagactttctactttcaagctcttcggatataagactgcgattttacacaagattcta 109  Q
    ||||| || |||||||||| |||||||||  ||||| ||||||| |||||||||||||||||| ||| |||||| ||||||||||| ||||||||||| |    
T  34668967 attatgctaaaatacttttccagattaaacatgatatagatttatactttctactttcaagcttttcagatataggactgcgatttcacacaagattcaa 34668868  T
Q  110 cccttattgtcagtcaggttacttaggtcaagcttcaatattgtaaatagttatagggcctatttggattggcttatttgagtttacgtactgacatgag 209  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34668867 cccttcttgtcagtcaggttacttaggtcaagcttcaatattgtaaagaattatagggcctatttggattggcttatttgagtttatgtactgacatgag 34668768  T
Q  210 cacttgtgagctgttggtaagagcttattatagcttatatgaaagtagttcgacttactttatctttcgttatcgaaatagtttatacataaaacactta 309  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||||| ||||||||    
T  34668767 cacttgtgagctgtttggaagagcttattatagcttatatgaaagtagttcaacttactttatctttcgttatagaaatagtctacacatagaacactta 34668668  T
Q  310 tatga 314  Q
     ||||    
T  34668667 catga 34668663  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 24460313 - 24460369
Alignment:
Q  163 tagggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 219  Q
    |||||||| ||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  24460313 tagggcctgtttggattgacttatttgaacttatctactgacatgagcacttgtgag 24460369  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 1662546 - 1662501
Alignment:
Q  268 tttatctttcgttatcgaaatagtttatacataaaacacttatatga 314  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||    
T  1662546 tttatctttcgttatagaagtagtttatacat-aaacacttatatga 1662501  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 4276735 - 4276780
Alignment:
Q  269 ttatctttcgttatcgaaatagtttatacataaaacacttatatga 314  Q
    |||||||| ||||| |||||||||||||| ||||||| ||||||||    
T  4276735 ttatcttttgttatagaaatagtttatacttaaaacatttatatga 4276780  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 17420207 - 17420142
Alignment:
Q  237 ttatagcttatatgaaagtagttcgac-ttactttatctttcgttatcgaaatagtttatacataa 301  Q
    ||||||||||||||||| | ||||||| ||| |||||||||  ||||  |||||||||||||||||    
T  17420207 ttatagcttatatgaaaattgttcgactttattttatcttttcttataaaaatagtttatacataa 17420142  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 1830197 - 1830143
Alignment:
Q  163 tagggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtg 217  Q
    |||||||| ||||||||| ||||||||||||||  ||||||||| ||||||||||    
T  1830197 tagggcctgtttggattgacttatttgagtttatttactgacataagcacttgtg 1830143  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 31740025 - 31740091
Alignment:
Q  237 ttatagcttatatgaaagtagttcgac-ttactttatctttcgttatcgaaatag-tttatacataa 301  Q
    ||||||||||||||||| ||||| ||| ||| ||||||||| ||||| ||||||| |||||||||||    
T  31740025 ttatagcttatatgaaaatagtttgactttattttatctttagttatagaaatagctttatacataa 31740091  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 35135728 - 35135804
Alignment:
Q  237 ttatagcttatatgaaagtagttcgac-ttactttatctttcgttatcgaaatagtttatacataaaacacttatatg 313  Q
    ||||||||||||||||| ||||| ||| ||| ||||||||| ||||| ||||||  |||||||| |||||||||||||    
T  35135728 ttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacat-aaacacttatatg 35135804  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 14706201 - 14706252
Alignment:
Q  168 cctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 219  Q
    ||||||||||||| |||||||||| |||| ||||||||| | ||||||||||    
T  14706201 cctatttggattgacttatttgagcttacctactgacataaacacttgtgag 14706252  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 37063146 - 37063205
Alignment:
Q  243 cttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataa 301  Q
    ||||||||||| ||||| ||||| | ||||||||| ||||| ||||||||||||||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataa 37063205  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 4619867 - 4619813
Alignment:
Q  161 tatagggcctatttggattggcttatttgagtttacgtactgacatgagcacttg 215  Q
    |||||||||| |||||||||||||||||| |||||  | ||||||| ||||||||    
T  4619867 tatagggcctctttggattggcttatttgtgtttatttgctgacataagcacttg 4619813  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 10771806 - 10771856
Alignment:
Q  169 ctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 219  Q
    ||||||||||||||||||||||| |||  ||||| ||| ||||||||||||    
T  10771806 ctatttggattggcttatttgagcttatctactggcataagcacttgtgag 10771856  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 19177597 - 19177547
Alignment:
Q  169 ctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 219  Q
    |||||||||||| ||||||||||||||| || || ||||| ||||||||||    
T  19177597 ctatttggattgacttatttgagtttacctattggcatgaacacttgtgag 19177547  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 42034215 - 42034167
Alignment:
Q  166 ggcctatttggattggcttatttgagtttacgtactgacatgagcactt 214  Q
    ||||| |||||||| ||||||||||| |||| ||||||||| |||||||    
T  42034215 ggcctgtttggattagcttatttgagcttacctactgacataagcactt 42034167  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 21593078 - 21593142
Alignment:
Q  237 ttatagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataa 301  Q
    ||||||||||||||||| ||||| ||||| | ||||||||| ||||| ||||||||||||||||||    
T  21593078 ttatagcttatatgaaaatagtt-gactttattttatctttagttatagaaatagtttatacataa 21593142  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 25571423 - 25571374
Alignment:
Q  157 tagttatagggcctatttggattggcttatttgagtttacgtactgacat 206  Q
    ||||| |||||||| ||||||||||||||||||||||||  |||||||||    
T  25571423 tagttttagggcctgtttggattggcttatttgagtttatctactgacat 25571374  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 19394864 - 19394916
Alignment:
Q  166 ggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtga 218  Q
    |||||||||||||||||||||||||| |||  || ||||||| ||| ||||||    
T  19394864 ggcctatttggattggcttatttgagcttatctattgacatgggcatttgtga 19394916  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 52333756 - 52333700
Alignment:
Q  163 tagggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 219  Q
    |||||||| ||| |||||||||||||||| |||  ||||||| | ||||||||||||    
T  52333756 tagggcctgtttcgattggcttatttgagcttatttactgacctaagcacttgtgag 52333700  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 53155267 - 53155204
Alignment:
Q  237 ttatagcttatatgaaagtagttcgacttactttatctttcgttatcgaaatagtttatacataa 301  Q
    ||||||| ||||||||| |||||||||||  ||||||||| |||||  |||||| ||||||||||    
T  53155267 ttatagcatatatgaaaatagttcgactttatttatcttttgttat-aaaatagcttatacataa 53155204  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 22667558 - 22667505
Alignment:
Q  166 ggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 219  Q
    ||||||||| |||||||||||||||| |||  ||||||||| ||||||||||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgag 22667505  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 22724197 - 22724144
Alignment:
Q  166 ggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 219  Q
    ||||||||| |||||||||||||||| |||  ||||||||| ||||||||||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgag 22724144  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 26990822 - 26990769
Alignment:
Q  166 ggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 219  Q
    ||||| ||||||||||||||||||||||| |  ||||| || ||||||||||||    
T  26990822 ggcctgtttggattggcttatttgagtttgccaactgatataagcacttgtgag 26990769  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 31337325 - 31337377
Alignment:
Q  164 agggcctatttggattggcttatttgagtttacgtactgacatgagcacttgt 216  Q
    |||| ||||||||||||| || ||||||||||  ||||||||| |||||||||    
T  31337325 agggtctatttggattggtttgtttgagtttatctactgacataagcacttgt 31337377  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 33894622 - 33894562
Alignment:
Q  241 agcttatatgaaagtagttcgacttactttatctttcgttatcgaaatagtttatacataa 301  Q
    |||||||||||||  |||| |||||| ||||||||| ||||| ||||||| ||||||||||    
T  33894622 agcttatatgaaaacagtttgacttattttatcttttgttatagaaatagcttatacataa 33894562  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 259710 - 259742
Alignment:
Q  163 tagggcctatttggattggcttatttgagttta 195  Q
    ||||||||| |||||||||||||||||||||||    
T  259710 tagggcctacttggattggcttatttgagttta 259742  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 46223146 - 46223212
Alignment:
Q  244 ttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttata 311  Q
    |||||||||| ||||||||||| | ||||||||| ||||| ||||||| |||||||| |||||||||||    
T  46223146 ttatatgaaa-tagttcgactttaatttatcttttgttatggaaatagcttatacat-aaacacttata 46223212  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 2487929 - 2487976
Alignment:
Q  172 tttggattggcttatttgagtttacgtactgacatgagcacttgtgag 219  Q
    |||||||||||||||||||||| |  ||||||||| ||||||||||||    
T  2487929 tttggattggcttatttgagttcatctactgacataagcacttgtgag 2487976  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 43717846 - 43717874
Alignment:
Q  163 tagggcctatttggattggcttatttgag 191  Q
    |||||||||||||||||||||||||||||    
T  43717846 tagggcctatttggattggcttatttgag 43717874  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 6310290 - 6310368
Alignment:
Q  237 ttatagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatga 314  Q
    |||||||||||||||||  | || ||||| |||| |||||| ||||| ||||| | ||||||||||| |||||||||||    
T  6310290 ttatagcttatatgaaaacaattagactttacttcatcttttgttatagaaattgattatacataaagcacttatatga 6310368  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 4308926 - 4308885
Alignment:
Q  172 tttggattggcttatttgagtttacgtactgacatgagcact 213  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  4308926 tttggattggcttatttgagtttatctactgacataagcact 4308885  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 7354202 - 7354145
Alignment:
Q  243 cttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacat 299  Q
    ||||||||||| |||||||| || | ||||||||| ||||| ||||||||||||||||    
T  7354202 cttatatgaaaatagttcgattttattttatcttttgttatagaaatagtttatacat 7354145  T

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