View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_95 (Length: 309)
Name: NF1149_low_95
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 3481960 - 3481682
Alignment:
| Q |
1 |
tactgtctttctcctttgtagtacttgttttgtttacactgaatgcttttgactcctaagttgaagagattcttcagatctgcatggaaaaacttttgga |
100 |
Q |
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| T |
3481960 |
tactgtctttctcctttgtagtacttgttttgtttacactgaatgcttttgactcctaagttgaagagattcttcagatctgcatggaaaaacttttgga |
3481861 |
T |
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| Q |
101 |
cattgtcagcatcaactattcagctttttgttgattcctaaatgttgaagcttttcaacaattcactctcatgatgattcagaataacatgtaagattgg |
200 |
Q |
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| T |
3481860 |
cattgtcagcatcaactattcagctttttgttgattcctaaatgttgaagcttttcaacaattcactctcatgatgattcagaataacatgtaagattgg |
3481761 |
T |
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| Q |
201 |
tttgcttttaatgtattcatgttgtaactgtttttgaatatgtgaatgttttacatttttggacttgtttctgatgatg |
279 |
Q |
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| T |
3481760 |
tttgcttttaatgtattcatgttgtaactgtttttgaatatgtgaatgttttacatttatggacttgtttctgatgatg |
3481682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 3457370 - 3457305
Alignment:
| Q |
152 |
ttttcaacaattcactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtatt |
217 |
Q |
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| T |
3457370 |
ttttcaacaattcactctcatcatggttcacaataacatgtaagactggttttcttttaatgtatt |
3457305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 3457540 - 3457432
Alignment:
| Q |
19 |
tagtacttgttttgtttaca-ctgaatgcttttgactcctaagttgaagagattcttcagatctgcatgg-aaaaacttttggaca---ttgtcagcatc |
113 |
Q |
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| T |
3457540 |
tagtacttgtttttgtttcagctgaatgcttttgactccaaagttgaagagattccttagatctacaaggaaaaaacttttgtacattgttgtcatcatc |
3457441 |
T |
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| Q |
114 |
aactattca |
122 |
Q |
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||||||||| |
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| T |
3457440 |
aactattca |
3457432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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