View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11500_high_11 (Length: 490)

Name: NF11500_high_11
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11500_high_11
NF11500_high_11
[»] chr4 (1 HSPs)
chr4 (14-476)||(54423473-54423934)
[»] chr1 (6 HSPs)
chr1 (151-474)||(20127319-20127642)
chr1 (140-468)||(27645436-27645764)
chr1 (27-157)||(20120928-20121056)
chr1 (158-443)||(13190424-13190709)
chr1 (209-285)||(12461045-12461121)
chr1 (110-441)||(44137419-44137750)
[»] chr8 (2 HSPs)
chr8 (146-285)||(9182994-9183133)
chr8 (146-285)||(11625140-11625279)
[»] chr6 (3 HSPs)
chr6 (146-285)||(10161217-10161356)
chr6 (209-285)||(16860983-16861059)
chr6 (152-266)||(21740989-21741103)
[»] scaffold0703 (1 HSPs)
scaffold0703 (209-285)||(1937-2013)
[»] scaffold0010 (1 HSPs)
scaffold0010 (146-273)||(238965-239092)
[»] chr3 (1 HSPs)
chr3 (345-387)||(51142253-51142295)


Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 14 - 476
Target Start/End: Complemental strand, 54423934 - 54423473
Alignment:
Q  14 agggtgataatccg-aatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcgcgtttctaaggtcctggtcaatcgtcttcgt 112  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  54423934 agggtgataatctggaatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcg--tttctaaggtcctggtcaatcgtcttcgt 54423837  T
Q  113 ccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcata 212  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54423836 ccacttattaacaaatggatttcccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcata 54423737  T
Q  213 tgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctatttt 312  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54423736 tgcgctgcaaaacaaaagaaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctatttt 54423637  T
Q  313 atttaaaatggggttcagttcacagtggacttcctggatgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcattggccct 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54423636 atttaaaatggggttcagttcacagtggacttcctggatgatgatgtgcatcacctccgttgaatatcacgtcattttcaacggcgaccgcattggccct 54423537  T
Q  413 aacactcccgaacgaggtctccgtcaaggctccccactctcaccatatctatacattctttgtg 476  Q
    | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  54423536 atcactcccgaacgaggtctccatcaaggctgcccactctcaccatatctatacattctttgtg 54423473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 151 - 474
Target Start/End: Original strand, 20127319 - 20127642
Alignment:
Q  151 ctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggct 250  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||||||||||||||||||| |||||||| ||||||||     
T  20127319 ctttgtgcattctcgctcaatcatggataatgcgctaaccgcttttgaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggca 20127418  T
Q  251 ctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctgga 350  Q
    || |||||||| |||||||||||||| |||||||||| |||| | ||||||||| | ||| |  |||||||||| ||||||||||| ||||| |||||||    
T  20127419 ctaaaacttgatatatccaaggcatttgatagtgtaagttggccttacctcaaatccattctccttaaaatgggtttcagttcacaatggacctcctgga 20127518  T
Q  351 tgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcattggccctaacactcccgaacgaggtctccgtcaaggctccccact 450  Q
    |||||||| ||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||| |  ||||||| ||| ||    
T  20127519 tgatgatgtgcatcacctccgttgaataccacgtcatttttaatggtgaccgcattggccctatcactcccgaacgaggtcttcaccaaggctgccccct 20127618  T
Q  451 ctcaccatatctatacattctttg 474  Q
    |||||| || |||||||| |||||    
T  20127619 ctcaccttacctatacatcctttg 20127642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 140 - 468
Target Start/End: Complemental strand, 27645764 - 27645436
Alignment:
Q  140 gaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaatag 239  Q
    ||||||||||| || || || || ||||| ||||||||||||||  |||| || || ||| |  | |||||||||||||||||||| ||||| ||||| |    
T  27645764 gaacaggcagcattcgttcactcccgctctatcatggataatgctttaacggcctttgaaatcttacatcatatgcgctgcaaaaccaaaggtaaaattg 27645665  T
Q  240 gtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtg 339  Q
    ||||||||||||| |||||||| || || ||||| || |||||||| |  |||| |||||| ||||||||| |    || ||||| ||  || | | |||    
T  27645664 gtgaggtggctctgaaacttgatatctctaaggcttttgatagtgttagctggttgtaccttaaagctattcttgacaagatgggtttttgtactcggtg 27645565  T
Q  340 gacttcctggatgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcattggccctaacactcccgaacgaggtctccgtcaa 439  Q
    |   || |||||||||||| ||||||| || || |||||||| || || ||||| ||||| |||||||| |||| ||| || ||||| || ||||| |||    
T  27645564 ggtatcatggatgatgatgtgcatcacttctgtggaatatcatgttatctttaatggcgatcgcattggacctatcacccctgaacgtggactccggcaa 27645465  T
Q  440 ggctccccactctcaccatatctatacat 468  Q
    |||| ||| |||||||| ||||| |||||    
T  27645464 ggctgccctctctcaccttatctctacat 27645436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 20120928 - 20121056
Alignment:
Q  27 gaatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcgcgtttctaaggtcctggtcaatcgtcttcgtccacttattaacaa 126  Q
    ||||||||||| |||||||| |||||||||||||| |||||  | |||||||| |  | ||||||||||| | ||||||||| | |||| | || |||||    
T  20120928 gaatccatgcgagaccttcggcctatttctctctgtaatgtactgtacaagattg--tctctaaggtccttgccaatcgtctccatccattaatcaacaa 20121025  T
Q  127 atgaattttccaagaacaggcagcctttgtg 157  Q
    ||| |||| ||||||||| ||||||||||||    
T  20121026 atggatttcccaagaacaagcagcctttgtg 20121056  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 443
Target Start/End: Complemental strand, 13190709 - 13190424
Alignment:
Q  158 cattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaac 257  Q
    |||||||| || ||||||||||||||  |||||||||| ||| ||||||| |||||||| |||||    ||||| ||| ||||| | || ||| | ||||    
T  13190709 cattctcgttccatcatggataatgctttaacagcatttgaaattcttcaccatatgcggtgcaagcacaaagggaaactaggtaacgtcgctatgaaac 13190610  T
Q  258 ttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctggatgatgat 357  Q
    |||| ||||| || || || |||||  |||  ||||| |||||| |||||||| |   ||| ||||| ||  ||||||| |||   || |||||| ||||    
T  13190609 ttgatatatcaaaagcttttgatagcataagctggtcatacctcgaagctattcttactaagatgggattttgttcacaatgggtctcttggatgttgat 13190510  T
Q  358 gcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcattggccctaacactcccgaacgaggtctccgtcaaggct 443  Q
    | ||||||  || || ||||||||||| ||||| ||||| ||||| |||| |||||  || || ||| |||||||||| |||||||    
T  13190509 gtgcatcatgtctgtcgaatatcacgttattttcaacggtgaccgaattgaccctattaccccggaaagaggtctccgacaaggct 13190424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 12461121 - 12461045
Alignment:
Q  209 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 285  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || |||||    
T  12461121 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt 12461045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 441
Target Start/End: Original strand, 44137419 - 44137750
Alignment:
Q  110 cgtccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatc 209  Q
    ||||| || ||||||||||| || |  | ||||||| | |||||||| || ||||| || ||||||||||| ||  ||||| |||| ||   ||| || |    
T  44137419 cgtcctctcattaacaaatggatctcaccagaacagtctgcctttgttcactctcgttctatcatggataacgctttaacaacatttgagactctccacc 44137518  T
Q  210 atatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctat 309  Q
    ||||||| |||||||  ||||||||||| ||||| || ||| | ||  | ||||| || ||||| || || ||||||| |||||| |||||  |||||||    
T  44137519 atatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaagttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctat 44137618  T
Q  310 tttatttaaaatggggttcagttcacagtggacttcctggatgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcattggc 409  Q
    | | |  || |||||||| | | |  | |||| ||| |||||||||||| | || ||||| || || || ||| |||||||||| || || ||||| ||     
T  44137619 tctttccaagatggggtttaatgctaaatggatttcttggatgatgatgtgtattacctctgtcgagtaccacatcatttttaatggtgatcgcatcggt 44137718  T
Q  410 cctaacactcccgaacgaggtctccgtcaagg 441  Q
    ||||  |||||| |||| ||||| || |||||    
T  44137719 cctattactccccaacgtggtctgcgccaagg 44137750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 285
Target Start/End: Complemental strand, 9183133 - 9182994
Alignment:
Q  146 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 245  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| |  |||||||||  |||||| |    
T  9183133 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg 9183034  T
Q  246 tggctctcaaacttgacatatccaaggcattcgatagtgt 285  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  9183033 tagctctaaaacttgacatttcgaaggcttttgatagtgt 9182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 285
Target Start/End: Original strand, 11625140 - 11625279
Alignment:
Q  146 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 245  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| | || ||| ||||||||||||| |  |||||||||| |||||| |    
T  11625140 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcgctgcaagaataaaggaaaaaaaggtgatg 11625239  T
Q  246 tggctctcaaacttgacatatccaaggcattcgatagtgt 285  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  11625240 tagctctaaaacttgacatttcgaaggcttttgatagtgt 11625279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 285
Target Start/End: Complemental strand, 10161356 - 10161217
Alignment:
Q  146 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 245  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| |  |||||||||  |||||| |    
T  10161356 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg 10161257  T
Q  246 tggctctcaaacttgacatatccaaggcattcgatagtgt 285  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  10161256 tagctctaaaacttgacatttcgaaggcttttgatagtgt 10161217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 16860983 - 16861059
Alignment:
Q  209 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 285  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | ||||||||||||||||| ||||| || |||||    
T  16860983 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgt 16861059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 21741103 - 21740989
Alignment:
Q  152 tttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctc 251  Q
    ||||| ||||||| ||| || ||||| ||||| || |  |||| |||| |||||||||||||||| || ||| | ||||| || | |||||||||||||     
T  21741103 tttgtccattctctctccattatggacaatgctctgatggcatacgaaattcttcatcatatgcgttgtaaatcgaaagggaagaaaggtgaggtggctt 21741004  T
Q  252 tcaaacttgacatat 266  Q
    | |||||||| ||||    
T  21741003 tgaaacttgatatat 21740989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 2013 - 1937
Alignment:
Q  209 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 285  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || |||||    
T  2013 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt 1937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 273
Target Start/End: Complemental strand, 239092 - 238965
Alignment:
Q  146 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 245  Q
    ||||||||||| |  ||| | || |||||||||||||| ||| |||| || ||| |||||||   |||||| ||||| | |||||| ||||| || ||||    
T  239092 gcagcctttgttccatctagatccatcatggataatgctctatcagcctttgaaattcttcactttatgcgatgcaagaaaaaaggtaaaattggcgagg 238993  T
Q  246 tggctctcaaacttgacatatccaaggc 273  Q
    ||||| | || ||||| |||||||||||    
T  238992 tggctttaaagcttgatatatccaaggc 238965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 51142295 - 51142253
Alignment:
Q  345 cctggatgatgatgcgcatcacctccgttgaatatcacgtcat 387  Q
    |||||||||||||| |||||||||| ||||||||||| |||||    
T  51142295 cctggatgatgatgtgcatcacctcagttgaatatcatgtcat 51142253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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