View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_high_13 (Length: 479)
Name: NF11500_high_13
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 186 - 461
Target Start/End: Complemental strand, 4928294 - 4928019
Alignment:
| Q |
186 |
ccatctagaggagtttcttcttaattaggatcatatttttcttaattaggatcatgagcttcatttcttcttcatatatatgtttcctccaagcacaact |
285 |
Q |
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| T |
4928294 |
ccatctagaggagtttcttcttaattaggatcatatttttcttaattaggatcatgagtttcatttcttcttcatatatatgtttcctccaagcacagct |
4928195 |
T |
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| Q |
286 |
tgttgaagatttcttggtcaattcataacttctgtactttcattaaagagaaaatttcactacttgattttttcttctgaagtttatgtataatttcttt |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4928194 |
tgttgaagatttcttggtcaattcataacttctgtactttcattaaagagaaaatttcactacttgattttttcttctgaagtttctgtataatttcttt |
4928095 |
T |
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| Q |
386 |
ctaatcttatcaagatgtgtttaatttgtgtatgatataaatgatgagttgcactgtcttttgaataatcctttct |
461 |
Q |
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| T |
4928094 |
ctaatcttatcaagatgtgtttaatttgtgtatgatataaatgatgagttgcactgtcttttgaataatcctttct |
4928019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 4928400 - 4928346
Alignment:
| Q |
80 |
ttagatcgatggttagtgctatttaagggataaaaacataggggaaaccccataa |
134 |
Q |
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| T |
4928400 |
ttagatcgatggttagtactatttaagggataaaaacataggggaaaccccataa |
4928346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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