View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_high_16 (Length: 454)
Name: NF11500_high_16
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 454
Target Start/End: Complemental strand, 53006428 - 53005984
Alignment:
| Q |
11 |
cacagattagttttcgaataggtgttcgaaacgaatatctgaatcattttggatagttgccgctacatagggaaacatagaattatgatttgaataataa |
110 |
Q |
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| T |
53006428 |
cacagattagttttcaaataggtgttcaaaacgaatatctgaatcattttggatagtcgccgctacatagggaaacatagaattatgatttgaataataa |
53006329 |
T |
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| Q |
111 |
ctaactagagatcagttatgaaatgactacagtaagatgtcgaaaaatttcctttccaggagaaataagcaaagtttatttgaatgcattgtgtgccttg |
210 |
Q |
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| T |
53006328 |
ctaactagagatcagttatgaaatgactacaataagatgtcgaaaaatttcctttccaggagaaataggcaaagtttatttgaatgcattgtgtgccttg |
53006229 |
T |
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| Q |
211 |
taaatgcaatcttggtttaacagtcaccgcaatttaagatattagatgcactgatggataagataacatggtttcattgtagctaattatacacaatgat |
310 |
Q |
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| T |
53006228 |
taaatgcaatcttggtttaacagtcaccgcaatttaagatattagatgcactgatggataagataacatggtttcattgtagctaattatacacaatgat |
53006129 |
T |
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| Q |
311 |
ccgaattgtaaggtagacatcaaatgacaaatctactcatttattagtttatctggctgtgaaaaattgcatcagttcttgcttct-agaaaaattagaa |
409 |
Q |
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| T |
53006128 |
ccgaattgtaaggtagacatcaaatgacaaatctactcatttattagtttatctggctgtgaaaaattgcatcagttcttgcttctaaaaaaaattagaa |
53006029 |
T |
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| Q |
410 |
tattagctatacgtaacagatatgaagttatgattgataagaaat |
454 |
Q |
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| T |
53006028 |
tattagctatatgtaacagataggaagttatgattgataagaaat |
53005984 |
T |
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