View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_high_18 (Length: 441)
Name: NF11500_high_18
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 432
Target Start/End: Original strand, 39300580 - 39300997
Alignment:
| Q |
14 |
tgtgtaataagaaacagtgattaatgacacgtgtgaatgttgtgaaattggatattgtgactcagcttataataatgaaaattaaaatatagatggatta |
113 |
Q |
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| T |
39300580 |
tgtggaataagaaacagtgattaataacacgtgtgaatggtgtgaaattggatattgtgactcagcttataataatgaaaattaaaatatagatggatta |
39300679 |
T |
|
| Q |
114 |
ggatgattggatgagacgaggctggtttttcgtgtttaaagacacgtggaagattgaaggagtgcctcgtatgagtttgtgcttggtagaaagaggtaca |
213 |
Q |
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| T |
39300680 |
ggatgattggatgaaacgaggctggtttttcgtgtttaaagacacgtggaagattgaaggattgcctcgtatgagtttgtgcttggtagaaagaggtaca |
39300779 |
T |
|
| Q |
214 |
ctgcagatcaatggaagacacctggtctcaataaatgatttaacagtttattggtgattcaagaatattcaattcgatcttccttttgttgtgggttatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
39300780 |
ctgcagatcaatggaagacacctggtctcaataaatgatttaacagtttattggtgattcaagaatattcaattcgatcttcgttttgttgtggcttatt |
39300879 |
T |
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| Q |
314 |
tttgaacaattatatttagactgtcattcattcaaatctcaagtttgaatctttagagtgtcaatgannnnnnnnnattttgtgtggactaatccataca |
413 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
39300880 |
tttgaacaattatatttagagtgtgattcattcaaatctcaagtttgaatctttagagtgtccctga-ttttttttattttgtgtggactaatccataca |
39300978 |
T |
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| Q |
414 |
taattttgttttgcctttg |
432 |
Q |
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| T |
39300979 |
taattttgttttgcctttg |
39300997 |
T |
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