View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_high_19 (Length: 432)
Name: NF11500_high_19
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_19 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 119 - 432
Target Start/End: Original strand, 23336623 - 23336921
Alignment:
| Q |
119 |
aggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcagg |
218 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| || || || |||||||||||||| |||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
23336623 |
aggacaaagttaaagcaaacagaagtggattgtgagtatttgaagagatgttgtgagacattaacagaagagaatagaagattacaaaaggaacttcaag |
23336722 |
T |
|
| Q |
219 |
aattgagagctttgaaaacttctcaaccattctacatgcaacttccagctaccactctcactatgtgtccttcttgtgaacgtgtagctacaaacccttg |
318 |
Q |
| |
|
| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23336723 |
agcttagagctttgaaaactactcaaccattctacatgcaacttccagctaccactctcactatgtgtccttcttgtgaacgtgtagctacaaacccttg |
23336822 |
T |
|
| Q |
319 |
caacaaccaaacaaacaccaacaagtcaagattctctaatgctcaagcccaagcccatcaggcccaagcccaagcccatcagatttcttcatgaccttat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23336823 |
caacaaccaaacaaacaccaacaagtcaagattctctaatgctcaa---------------gcccaagcccaagcccatcagatttcttcatgaccttat |
23336907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 111 - 298
Target Start/End: Original strand, 37140597 - 37140784
Alignment:
| Q |
111 |
tactgtacaggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaagga |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37140597 |
tactgtacaggaccaagtcaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctgacagaagaaaataaaagattacaaaagga |
37140696 |
T |
|
| Q |
211 |
acttcaggaattgagagctttgaaaacttctcaaccattctacatgcaacttccagctaccactctcactatgtgtccttcttgtgaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37140697 |
acttcaggaattgagagctttgaaaacttctcaaccattctacatgcaacttccagctaccactctcactatgtgtccttcttgtgaa |
37140784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 119 - 312
Target Start/End: Complemental strand, 25901716 - 25901523
Alignment:
| Q |
119 |
aggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcagg |
218 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||| || |||| ||||||||||| | |
|
|
| T |
25901716 |
aggactaagttgaagcaaacagaagtggattgtgaatacttaaagagatgctgtgaaacactaacagaagaaaataggaggctacacaaggaacttcaag |
25901617 |
T |
|
| Q |
219 |
aattgagagctttgaaaacttctcaaccattctacatgcaacttccagctaccactctcactatgtgtccttcttgtgaacgtgtagctacaaa |
312 |
Q |
| |
|
|||| |||||||| |||||||| | |||||| |||||||| | ||||| || ||| | |||||||| ||||||||||||||||| || ||||| |
|
|
| T |
25901616 |
aattaagagctttaaaaacttcaaatccattcaacatgcaattaccagcaactactttaactatgtgcccttcttgtgaacgtgttgcaacaaa |
25901523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 891119 - 891184
Alignment:
| Q |
118 |
caggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaac |
183 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
891119 |
caggaccaagttgaagcaaactgaagtggattgtgagtacttgaagagatgctgtgagactctaac |
891184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 4059100 - 4059241
Alignment:
| Q |
118 |
caggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcag |
217 |
Q |
| |
|
|||||| ||||| |||||||| || || |||||||||| || |||||||||||||||| |||||| || ||||||| | | || ||||| ||| | || |
|
|
| T |
4059100 |
caggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgagaatctaacggatgaaaatagacggttgcaaaaagaagtgcaa |
4059199 |
T |
|
| Q |
218 |
gaattgagagctttgaaaacttctcaaccattctacatgcaa |
259 |
Q |
| |
|
|| || ||||| |||||| ||| | || ||||||||||||| |
|
|
| T |
4059200 |
gagttaagagcattgaaactttccccacaattctacatgcaa |
4059241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University