View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_high_2 (Length: 764)
Name: NF11500_high_2
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 107 - 746
Target Start/End: Original strand, 8037474 - 8038113
Alignment:
| Q |
107 |
ctaacagaggaagtgtgtcatgaattggccaaacaaataggagaagacaaaactaagattgagaagcttatgagggactcaataaaaatttacaaggaag |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8037474 |
ctaacagaggaagtgtgtcatgaattgaccaaacaaataggagaagacaaaactaagattgagaagcttatgagggactcaataaaaatttacaaggaag |
8037573 |
T |
|
| Q |
207 |
ttgaagatgagagggagatgatgcaaatgaccgagcaatggcgcgaagtacgcgtgcaaatgaagctagacgatgcaaaaaatgtacttgaagagaaata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8037574 |
ttgaagatgagagggagatgatgcaaatgaccgagcaatggcgcgaagtacgcgtgcaaatgaagctagacgatgcaaaaaatgtacttgaagagaaata |
8037673 |
T |
|
| Q |
307 |
taatcaaatggtagagttgattgcttatcttcaaatgtttttaagatcaaaaggtgatgaagctaaccagaaggaaattgaggatgctgggttgatcaaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8037674 |
taatcaaatggtagagttgattgcttatcttcaaatgtttttaagatcaaaaggtgatgaagctaaccagaaggaaattgaggatgctaggttgatcaaa |
8037773 |
T |
|
| Q |
407 |
caagtggttgaatcggtaaacattcaacaaattctagaactttcgtataatttctcaaaatcagatgatgtatttccaatctatgaggaatgtagagaaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8037774 |
caagtggttgaatcggtaaacattcaacaaattctagaactttcgtataatttctcaaaatcagatgatgtatttccaatctatgaggaatgtagagaaa |
8037873 |
T |
|
| Q |
507 |
aagcaggtaaggaatattctcgcgcctctaatcaagtagcttcgtgctgcaacgatgaaacaatgatttctcacacgaaacattctcaacatagaatgga |
606 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8037874 |
aagtaggtaaggaatattctcccgcctctaatcaagtagcttcgtgccgcaacgatgaaacaatgatttctcacacgaaatattctcaacatagaatgga |
8037973 |
T |
|
| Q |
607 |
aaacaacatgattggcgaaactactacttctttatgtaaagattattctgttgaaggtagcttcaaacactttgaattattgaaacaaggaaactcaaca |
706 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8037974 |
aaacaacatgattggtgaaactactacttctttatgtaaagattactctgttgaaggtagcttcaaacactttgaattattgaaacaagcaaactcaaca |
8038073 |
T |
|
| Q |
707 |
gatcacaacatcaatcctcacatagctcgtgggatgaaag |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8038074 |
gatcacaacatcaatcctcacatagctcgtgggatgaaag |
8038113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8037368 - 8037439
Alignment:
| Q |
1 |
gaggatggagttgctgaataccaaattgttgcatgaattggatgtaggtaacgaatccactgcgcagtttat |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8037368 |
gaggatggagttgctgaataccaaattgttgcatgaattggatgtaggtaacgaatccactgcgcagtttat |
8037439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University