View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_high_21 (Length: 394)
Name: NF11500_high_21
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_21 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] scaffold0430 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 12437812 - 12437431
Alignment:
| Q |
13 |
cagacaagactacaaaatcaaagcggtaaaaattgagtaggctccaaagccgtcctcggggtactcacatcaactatacttcctcaacctgcaagcctac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12437812 |
cagacaagactacaaaatcaaagcggtaaaaattgagtaggctccaaagccgtcctcggggtactcacgtcaactatacttcctcaacctgcaagcctac |
12437713 |
T |
|
| Q |
113 |
accataaggatctaggcgatcaacaaccacttgagggtgagatatacgttcaacataaatgaaatatgaacgcatgtacaatattaggatcacaacatca |
212 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12437712 |
accacaaggatctaggcgaccaacaaccacttgagggtgagatatacgttcaacataaatgaaatatgaacgcatgtacaatattaggatcacaacatca |
12437613 |
T |
|
| Q |
213 |
tattcacatattcatcttaagcaataccatattcacatgtattctcattcaattatttaaatagatacaacgaatctcaaatcatcaccacaaggataca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
12437612 |
tattcacatattcatcttaagcaataccatattcacatgtattctcattcaattatttaaacagatacaacaaatctcaaatcatcaccacaaggatata |
12437513 |
T |
|
| Q |
313 |
aacaaggattcatatcatcgtataatcaccaagctgaatacataacattcacacttcatctccccgtcgtcaaatcacacat |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12437512 |
aacaaggattcatatcatcgtataatcaccaagttgaatacataacattcacacttcatctccccatcgtcaaatcacacat |
12437431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 185 - 307
Target Start/End: Original strand, 41374962 - 41375084
Alignment:
| Q |
185 |
catgtacaatattaggatcacaacatcatattcacatattcatcttaagcaataccatattcacatgtattctcattcaattatttaaatagatacaacg |
284 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |
|
|
| T |
41374962 |
catgtatagtattaggatcacaacatcatatacacatattcatcttaagcaataccatattcacatgtattctcataaaattatataaatagatacaaag |
41375061 |
T |
|
| Q |
285 |
aatctcaaatcatcaccacaagg |
307 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
41375062 |
aatctcaaatcatcatcacaagg |
41375084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 372
Target Start/End: Complemental strand, 16217314 - 16217148
Alignment:
| Q |
204 |
acaacatcatattcacatattcatcttaagcaataccatattcacatgtattctcattcaattatttaaatagatacaacgaatctcaaatcatcaccac |
303 |
Q |
| |
|
||||||| |||| ||||||||||||||| | ||| |||||||||||||||||||||||||||| || | | || | ||| ||||| ||||| ||| |
|
|
| T |
16217314 |
acaacataatataaacatattcatcttaaacc-tacattattcacatgtattctcattcaattatt-aattggttatatggaacttcaaaacatcatcac |
16217217 |
T |
|
| Q |
304 |
aaggatacaaacaaggattcatatcatcgtataatcaccaagctgaatacataacattcacacttcatc |
372 |
Q |
| |
|
||| ||| || |||| ||||| ||||||| |||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
16217216 |
aagaatataagcaagcattcacatcatcgaataatcaccaagttgaatacataacattcacacctcatc |
16217148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 30613575 - 30613511
Alignment:
| Q |
204 |
acaacatcatattcacatattcatcttaagcaataccatattcacatgtattctcattcaattatt |
269 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| |||| ||||||||||||| ||||| | ||||||| |
|
|
| T |
30613575 |
acaaaatcatataaacatattcatcttaagc-atacaatattcacatgtaatctcactaaattatt |
30613511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 11455115 - 11455471
Alignment:
| Q |
18 |
aagactacaaaatcaaagcggtaaaaattgagtaggctccaaagccgtcctcggggtactcacatcaactatacttcctcaacctgcaagcctacaccat |
117 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||||||| |||||||||||| |||| | ||||||| |||||||||||||| |||||||| |
|
|
| T |
11455115 |
aagactccaaaatcaaagtggtaaaggatgagtaggctccaa-gccgtcctcgggaaactctcggcaactatgtgtcctcaacctgcaaatctacaccac |
11455213 |
T |
|
| Q |
118 |
aaggatctaggcgatcaacaaccacttg-agggtgagatatacgttcaacataaatgaaatatgaacgcat--gtacaatattaggatcacaacatcata |
214 |
Q |
| |
|
|||||| |||||||||| ||| ||||| ||||||| ||||||||||| ||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
11455214 |
aaggatgtaggcgatcatttgtcacacatagggtaagatataaattcaacataaaggaaatatgaacgcatatgtatagtattaggatcacaacatcatt |
11455313 |
T |
|
| Q |
215 |
ttcacatattcatcttaagcaataccatattcacatgtattctcattcaattatttaaatagatacaacgaatctcaaatcatcaccacaaggatacaaa |
314 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |
|
|
| T |
11455314 |
tacacgtattcatcttaagcaataccatattcacatgtattcttattcaattatttaaatagatacaacgaatctcaaatcatcatcacaaggacataaa |
11455413 |
T |
|
| Q |
315 |
caaggattcatatcatcgtataatcaccaagctgaatacataacattcacacttcatc |
372 |
Q |
| |
|
|||| ||| | ||||||| || ||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
11455414 |
caagtattaacatcatcgaattatcaccaagtcgaatgcatagcattcacacttcatc |
11455471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 8896744 - 8896817
Alignment:
| Q |
99 |
acctgcaagcctacaccataaggatctaggcgatc-aacaaccacttgagggtgagatatacgttcaacataaa |
171 |
Q |
| |
|
||||||| | |||||||| |||||| ||||||| | |||||||||| | |||| ||||||| |||||||||||| |
|
|
| T |
8896744 |
acctgcacgtctacaccacaaggatgtaggcgaccgaacaaccactagcgggtaagatataggttcaacataaa |
8896817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 152 - 282
Target Start/End: Complemental strand, 9854511 - 9854379
Alignment:
| Q |
152 |
agatatacgttcaacataaatgaaatatgaacgcatgtacaatattaggatcacaacatcatatt--cacatattcatcttaagcaataccatattcaca |
249 |
Q |
| |
|
||||||| ||||||||| ||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
9854511 |
agatataaattcaacataggggaaatataaacgaatgtataatattaggatcacaacatcatatatacacatattcatcttaagcaatattatattcaca |
9854412 |
T |
|
| Q |
250 |
tgtattctcattcaattatttaaatagatacaa |
282 |
Q |
| |
|
| |||||||||||||| |||||||||||||||| |
|
|
| T |
9854411 |
tttattctcattcaatcatttaaatagatacaa |
9854379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 10221395 - 10221685
Alignment:
| Q |
14 |
agacaagactacaaaatcaaagcggtaaaaattgagtaggctccaaagccgtcctcggggtactcacatcaactatacttcctcaacctgcaagcctaca |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||||| ||||| |||| | | ||||||||||||||| || || |
|
|
| T |
10221395 |
agacaagactccaaaatcaaagcggtaaaagatgagtaggctgcaa-gccgtcctcggaa-actcatggtaactttgcgtcctcaacctgcaagtctcca |
10221492 |
T |
|
| Q |
114 |
ccataaggatctaggcgatcaacaaccacttg-agggtgagatatacgttcaacataaatgaaatatgaacgcatgtacaatattaggatcacaacatca |
212 |
Q |
| |
|
||| |||| ||||||| || ||| | ||||| ||||||| || |||||| | ||||||||||| ||| || | |||||||||| |||||||| |
|
|
| T |
10221493 |
ccacaagggcgtaggcgaccatttgccaaacgtagggtaagatataaatttaacatagaggaaatatgaacacatatatagtattaggatcgcaacatca |
10221592 |
T |
|
| Q |
213 |
tattcacatattcatcttaagcaataccatattcacatgtattctcattcaattatttaaatagatacaacgaatctcaaatcatcaccacaag |
306 |
Q |
| |
|
||| || ||||||||||||||||||||||||| ||||| ||||||||| ||| | ||||| | ||||| ||||||||||||||| |||||| |
|
|
| T |
10221593 |
tatacaagtattcatcttaagcaataccatattaacatgcattctcatt-gattggtaaaatatacacaacaaatctcaaatcatcatcacaag |
10221685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 356
Target Start/End: Complemental strand, 31325634 - 31325534
Alignment:
| Q |
256 |
ctcattcaattatttaaatagatacaacgaatctcaaatcatcaccacaaggatacaaacaaggattcatatcatcgtataatcaccaagctgaatacat |
355 |
Q |
| |
|
||||||||| ||||||| ||||||||| |||| ||||||||||| || || |||| | |||| ||||| |||| | |||||||||||| ||||||||| |
|
|
| T |
31325634 |
ctcattcaagtatttaagtagatacaatgaatatcaaatcatcatcataaagatatatgcaagtattcacatcaccatataatcaccaaattgaatacat |
31325535 |
T |
|
| Q |
356 |
a |
356 |
Q |
| |
|
| |
|
|
| T |
31325534 |
a |
31325534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 9854335 - 9854268
Alignment:
| Q |
297 |
tcaccacaaggatacaaacaaggattcatatcatcgtataatcaccaagctgaatacataacattcac |
364 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| || ||||||||| ||||||||| ||||||| |
|
|
| T |
9854335 |
tcaccacaaggatataaacaagtattcacatcatcaaattatcaccaagttgaatacatgtcattcac |
9854268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 21497513 - 21497394
Alignment:
| Q |
70 |
ggggtactcacatcaactatacttcctcaacctgcaagcctacaccataaggatctaggcgatcaacaaccacttgagggtgagatatacgttcaacata |
169 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||| |||| |||||| |||||| ||||||| ||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
21497513 |
ggggtactcac-tcaactatatgtccccaacctacaagtctacactgcaaggatgtaggcgaccaacaaccactggagggtgggatatacattcaacata |
21497415 |
T |
|
| Q |
170 |
aatgaaatatgaacgcatgta |
190 |
Q |
| |
|
|| ||||||||||| |||||| |
|
|
| T |
21497414 |
aaggaaatatgaacacatgta |
21497394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 6019676 - 6019534
Alignment:
| Q |
145 |
gagggtgagatatacgttcaacataaatgaaatatgaacgcatgtacaatattaggatcacaacatcatatt--cacatattcatcttaagcaataccat |
242 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||| ||| |||| | ||||||||||| ||||| |||||| |||||| |||| |||||||||| || |
|
|
| T |
6019676 |
gagggtaagatatacgttcaacataaagaagatacaaacacatgcataatattaggataacaacgtcatataagcacatactcat-ttaagcaatataat |
6019578 |
T |
|
| Q |
243 |
attcacatgtattctcattcaattatttaaatagatacaacgaa |
286 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
6019577 |
attctcatgcattcttattcaattatttaaatagacacaacgaa |
6019534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 21933383 - 21933305
Alignment:
| Q |
93 |
tcctcaacctgcaagcctacaccataaggatctaggcgatcaacaaccacttgagggtgagatatacgttcaacataaa |
171 |
Q |
| |
|
||||||||||||| | |||||||| ||||| ||||||| ||| ||||||| ||| || ||||||| |||||||||||| |
|
|
| T |
21933383 |
tcctcaacctgcacgtctacaccacgaggatgtaggcgaccaaaaaccactagagagtaagatatatgttcaacataaa |
21933305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 9982 - 9930
Alignment:
| Q |
218 |
acatattcatcttaagcaataccatattcacatgtattctcattcaattattta |
271 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| | ||||||||||| |
|
|
| T |
9982 |
acatattcatcttaagca-taaaatattcacatgtattcttactcaattattta |
9930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University