View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11500_high_22 (Length: 380)

Name: NF11500_high_22
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11500_high_22
NF11500_high_22
[»] chr1 (41 HSPs)
chr1 (19-371)||(43954133-43954485)
chr1 (105-315)||(38868872-38869085)
chr1 (105-316)||(40416360-40416574)
chr1 (105-316)||(3818935-3819149)
chr1 (105-225)||(6025691-6025808)
chr1 (106-225)||(30834057-30834173)
chr1 (105-316)||(43423708-43423922)
chr1 (185-314)||(14225985-14226120)
chr1 (240-316)||(1661419-1661495)
chr1 (185-274)||(10569223-10569318)
chr1 (240-316)||(17275185-17275261)
chr1 (203-306)||(48431580-48431689)
chr1 (203-316)||(2544588-2544707)
chr1 (118-173)||(8203226-8203282)
chr1 (106-173)||(8342961-8343029)
chr1 (100-236)||(42501183-42501316)
chr1 (240-315)||(13827934-13828009)
chr1 (203-238)||(27704081-27704116)
chr1 (244-311)||(39525775-39525842)
chr1 (202-316)||(40419628-40419748)
chr1 (240-316)||(9509307-9509383)
chr1 (118-173)||(19969304-19969360)
chr1 (118-173)||(32404618-32404674)
chr1 (240-316)||(43240596-43240672)
chr1 (240-316)||(51812514-51812590)
chr1 (118-239)||(6573348-6573468)
chr1 (105-163)||(8676944-8677003)
chr1 (185-236)||(17640209-17640260)
chr1 (240-315)||(39140510-39140585)
chr1 (254-316)||(17267927-17267989)
chr1 (105-139)||(40920608-40920642)
chr1 (202-236)||(43898304-43898338)
chr1 (105-173)||(478812-478881)
chr1 (112-184)||(853871-853944)
chr1 (111-140)||(6299478-6299507)
chr1 (255-316)||(36340035-36340096)
chr1 (240-316)||(1210734-1210810)
chr1 (105-133)||(25460198-25460226)
chr1 (240-316)||(32231171-32231247)
chr1 (240-316)||(34792566-34792642)
chr1 (105-137)||(48861456-48861488)
[»] chr7 (43 HSPs)
chr7 (185-315)||(19262590-19262725)
chr7 (202-316)||(28020953-28021073)
chr7 (118-316)||(28628025-28628226)
chr7 (203-316)||(39811946-39812065)
chr7 (203-316)||(47848663-47848782)
chr7 (185-316)||(1740790-1740927)
chr7 (205-315)||(30632958-30633071)
chr7 (185-315)||(36514363-36514499)
chr7 (240-316)||(27021909-27021985)
chr7 (213-313)||(42187462-42187568)
chr7 (240-310)||(38920789-38920859)
chr7 (240-289)||(7220760-7220809)
chr7 (203-315)||(27893725-27893840)
chr7 (104-151)||(29653624-29653671)
chr7 (104-151)||(40139026-40139073)
chr7 (207-277)||(6420668-6420744)
chr7 (240-281)||(24549910-24549951)
chr7 (240-316)||(6374857-6374933)
chr7 (106-173)||(28858179-28858247)
chr7 (242-314)||(40169640-40169712)
chr7 (240-316)||(43282397-43282473)
chr7 (240-315)||(7189443-7189518)
chr7 (104-151)||(9191932-9191979)
chr7 (240-315)||(9797921-9797995)
chr7 (105-159)||(24549767-24549822)
chr7 (105-140)||(30200043-30200078)
chr7 (242-289)||(41483507-41483554)
chr7 (104-173)||(45601610-45601680)
chr7 (105-173)||(12966150-12966219)
chr7 (105-173)||(38135292-38135361)
chr7 (240-289)||(41948532-41948581)
chr7 (240-288)||(12966039-12966087)
chr7 (240-316)||(13859225-13859301)
chr7 (240-304)||(18605363-18605427)
chr7 (240-304)||(18637563-18637627)
chr7 (240-304)||(18650997-18651061)
chr7 (105-164)||(22174143-22174203)
chr7 (240-316)||(34869409-34869485)
chr7 (240-316)||(36136753-36136829)
chr7 (252-316)||(37439570-37439634)
chr7 (118-173)||(40830336-40830392)
chr7 (109-164)||(41461242-41461298)
chr7 (240-316)||(49029265-49029341)
[»] chr2 (29 HSPs)
chr2 (112-315)||(42092507-42092713)
chr2 (105-278)||(26784419-26784595)
chr2 (113-316)||(43832088-43832293)
chr2 (104-277)||(12026083-12026259)
chr2 (105-236)||(19235063-19235191)
chr2 (242-316)||(11412710-11412784)
chr2 (202-316)||(37481790-37481910)
chr2 (240-316)||(13240962-13241038)
chr2 (203-316)||(43752121-43752240)
chr2 (106-153)||(42582518-42582565)
chr2 (105-222)||(33504312-33504427)
chr2 (105-173)||(33287555-33287624)
chr2 (207-277)||(42149824-42149900)
chr2 (203-268)||(3481178-3481249)
chr2 (93-225)||(29548704-29548833)
chr2 (104-151)||(8197619-8197666)
chr2 (104-151)||(8202379-8202426)
chr2 (104-151)||(31254445-31254492)
chr2 (240-314)||(18188771-18188845)
chr2 (107-141)||(32402667-32402701)
chr2 (105-239)||(37470212-37470343)
chr2 (201-238)||(38860251-38860288)
chr2 (240-289)||(41779525-41779574)
chr2 (186-239)||(43260476-43260529)
chr2 (104-159)||(1626343-1626399)
chr2 (240-320)||(3866057-3866137)
chr2 (104-140)||(18188920-18188956)
chr2 (118-173)||(26670902-26670958)
chr2 (203-239)||(45077827-45077863)
[»] chr3 (22 HSPs)
chr3 (106-307)||(46431759-46431957)
chr3 (105-315)||(21200540-21200751)
chr3 (105-277)||(42026615-42026790)
chr3 (203-316)||(45289265-45289386)
chr3 (106-184)||(29475811-29475888)
chr3 (201-315)||(36820133-36820253)
chr3 (240-320)||(3987032-3987112)
chr3 (240-312)||(50960850-50960922)
chr3 (239-315)||(54365193-54365268)
chr3 (104-315)||(37227918-37228132)
chr3 (206-316)||(50249373-50249492)
chr3 (242-316)||(54128367-54128441)
chr3 (209-315)||(34719252-34719364)
chr3 (240-316)||(19676297-19676373)
chr3 (240-316)||(49503771-49503847)
chr3 (240-315)||(48734352-48734427)
chr3 (118-175)||(36820069-36820127)
chr3 (106-136)||(46140579-46140609)
chr3 (119-175)||(2340810-2340867)
chr3 (110-146)||(6988063-6988099)
chr3 (118-173)||(19162679-19162735)
chr3 (240-316)||(52138789-52138865)
[»] chr4 (42 HSPs)
chr4 (105-316)||(54470196-54470410)
chr4 (203-316)||(28497479-28497597)
chr4 (203-289)||(46715546-46715638)
chr4 (211-316)||(31339526-31339636)
chr4 (240-315)||(51252678-51252753)
chr4 (240-316)||(1380356-1380432)
chr4 (105-149)||(6843774-6843818)
chr4 (240-316)||(41192825-41192901)
chr4 (244-312)||(42293470-42293538)
chr4 (104-151)||(7544601-7544648)
chr4 (239-289)||(1427500-1427550)
chr4 (105-316)||(33709913-33710127)
chr4 (118-231)||(26356699-26356809)
chr4 (242-315)||(44686789-44686861)
chr4 (111-236)||(47147448-47147570)
chr4 (240-289)||(47611743-47611792)
chr4 (100-159)||(20047583-20047643)
chr4 (240-316)||(35555864-35555940)
chr4 (240-304)||(38903937-38904001)
chr4 (248-316)||(40018408-40018476)
chr4 (240-316)||(42639237-42639313)
chr4 (240-316)||(46372013-46372089)
chr4 (105-141)||(50662555-50662591)
chr4 (240-315)||(28236173-28236248)
chr4 (105-140)||(41192229-41192264)
chr4 (107-160)||(37042745-37042799)
chr4 (104-173)||(38903796-38903865)
chr4 (105-151)||(42639099-42639145)
chr4 (105-150)||(25574982-25575027)
chr4 (118-239)||(34233116-34233234)
chr4 (243-316)||(44047568-44047641)
chr4 (242-315)||(44667464-44667536)
chr4 (105-225)||(7681989-7682106)
chr4 (240-316)||(23906512-23906588)
chr4 (108-152)||(31403116-31403160)
chr4 (240-316)||(31960031-31960107)
chr4 (114-173)||(35690405-35690465)
chr4 (105-172)||(37488226-37488294)
chr4 (244-316)||(38570968-38571040)
chr4 (105-164)||(42293344-42293404)
chr4 (240-316)||(43433913-43433989)
chr4 (240-316)||(52569732-52569808)
[»] chr5 (21 HSPs)
chr5 (203-365)||(15489666-15489834)
chr5 (185-309)||(18351063-18351194)
chr5 (118-289)||(42199302-42199476)
chr5 (105-230)||(12576939-12577061)
chr5 (203-316)||(7359434-7359552)
chr5 (105-316)||(14749296-14749510)
chr5 (260-320)||(219690-219750)
chr5 (240-312)||(33667209-33667281)
chr5 (240-315)||(31636137-31636212)
chr5 (251-311)||(27887-27947)
chr5 (112-152)||(28005691-28005731)
chr5 (240-316)||(43558044-43558120)
chr5 (105-175)||(42199525-42199596)
chr5 (254-316)||(14667752-14667814)
chr5 (106-152)||(39322146-39322192)
chr5 (240-289)||(27553847-27553896)
chr5 (105-173)||(38684614-38684683)
chr5 (240-316)||(1287796-1287872)
chr5 (240-316)||(4496373-4496449)
chr5 (242-286)||(18698818-18698862)
chr5 (240-316)||(34273016-34273092)
[»] chr8 (28 HSPs)
chr8 (240-307)||(9695629-9695696)
chr8 (104-239)||(38178338-38178470)
chr8 (243-316)||(6483246-6483319)
chr8 (104-236)||(10079985-10080114)
chr8 (105-184)||(35643685-35643765)
chr8 (242-313)||(29700268-29700339)
chr8 (105-181)||(10108939-10109016)
chr8 (240-313)||(18474177-18474250)
chr8 (203-236)||(38409196-38409229)
chr8 (102-151)||(39388940-39388989)
chr8 (195-236)||(45331734-45331775)
chr8 (240-316)||(2796546-2796622)
chr8 (240-316)||(13589475-13589551)
chr8 (105-159)||(79175-79230)
chr8 (105-140)||(38483048-38483083)
chr8 (202-236)||(7531817-7531851)
chr8 (240-289)||(1549594-1549643)
chr8 (240-305)||(2776446-2776511)
chr8 (113-173)||(4011217-4011278)
chr8 (210-304)||(7046335-7046435)
chr8 (240-321)||(13171866-13171947)
chr8 (244-309)||(41444547-41444612)
chr8 (244-316)||(12611524-12611596)
chr8 (240-316)||(23023232-23023308)
chr8 (203-239)||(29520722-29520758)
chr8 (240-316)||(36565458-36565534)
chr8 (254-314)||(42493537-42493597)
chr8 (240-316)||(45512712-45512788)
[»] scaffold0018 (3 HSPs)
scaffold0018 (240-313)||(44085-44158)
scaffold0018 (240-316)||(31457-31533)
scaffold0018 (118-173)||(178512-178568)
[»] scaffold0373 (1 HSPs)
scaffold0373 (105-149)||(2380-2424)
[»] chr6 (9 HSPs)
chr6 (185-274)||(32913418-32913513)
chr6 (240-316)||(33084047-33084123)
chr6 (105-151)||(35199701-35199747)
chr6 (105-184)||(34584-34664)
chr6 (203-316)||(9593880-9593999)
chr6 (240-308)||(9749441-9749509)
chr6 (205-238)||(4948480-4948513)
chr6 (205-238)||(4955451-4955484)
chr6 (249-313)||(21870299-21870363)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 43954485 - 43954133
Alignment:
Q  19 tgtttatctataagttctttgtaaaaaacaacgatcaagccttatctcactttgaagagtcagctacatagatctctatattatttcatatttctatcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  43954485 tgtttatctataagttctttgtaaaaaacaacgatcaagccttatctcactttgtagagtcagctacatagatctctatataatttcatatttctatcaa 43954386  T
Q  119 actcattaatctctagatcttttgtaatagttttcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccatctgatctac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43954385 actcattaatctctagatcttttgtaatagttttcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccatctgatctac 43954286  T
Q  219 tctccttgctacataatctactctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctcca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43954285 tctccttgctacataatctactctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctcca 43954186  T
Q  319 atcctatcttgtctagttttggcacacattcaaagcagtatcctcatctctgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43954185 atcctatcttgtctagttttggcacacattcaaagcagtatcctaatctctgc 43954133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 38869085 - 38868872
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    ||||| |||||| ||| |||||||| ||||||||||  ||||| ||| |||||||| |||| ||||||||   ||||||||    | ||| ||||  |||    
T  38869085 catatatctatccaacccattaatcgctagatctttcttaataatttctcttatagtttttctaggtcttcttctgcctct----aatgatttgactacc 38868990  T
Q  204 ctccatctgatctactctccttgctacataatctact------ctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggc 297  Q
    |||||||| |||||||||||| |||| | ||||||||      |||||||||||| ||||||||||||||| |||||||| ||| ||||||| ||||||     
T  38868989 ctccatctaatctactctcctcgctagagaatctactagtgttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctatgataggt 38868890  T
Q  298 gctaccccaactctctct 315  Q
    ||||| ||||| ||||||    
T  38868889 gctactccaaccctctct 38868872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 316
Target Start/End: Complemental strand, 40416574 - 40416360
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||| ||| ||||||||||||| |||||||||  ||||||||| |||||||| |||| ||||||||   |||    ||| | ||||  |||  | |    
T  40416574 catatttcgatccaactcattaatctatagatctttcttaatagtttgtcttatagtttttctaggtcttcttctg----tctttggtgatctgactatc 40416479  T
Q  204 ctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggc 297  Q
    || ||||||||||||||||||| ||||| |||||||      |||||||||||||  ||||||||||||||  ||||||| ||| |||||||  |||||     
T  40416478 ctgcatctgatctactctccttactacaaaatctacagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttctactataggt 40416379  T
Q  298 gctaccccaactctctctc 316  Q
    ||||| |||||||||||||    
T  40416378 gctactccaactctctctc 40416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 316
Target Start/End: Original strand, 3818935 - 3819149
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||  |||||||||||||||| ||||||  ||||||||| |||||||| ||||  |||||||  |||  || |||||||||  ||||| |||    
T  3818935 catatttctattcaactcattaatctctaaatctttcttaatagtttctcttatagtttttcaaggtctt--cct--ctttctctagtggtttgattacc 3819030  T
Q  204 ctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggc 297  Q
    ||||||||||||||||||| || ||| | |||| ||      ||| ||||||||| |||||||| |||| | |||| ||| ||| |||||||  |||||     
T  3819031 ctccatctgatctactctctttactagagaatccacaagtcttctttctacatgcccaaaccacttaagtctagttaccaccatcttttctaccataggt 3819130  T
Q  298 gctaccccaactctctctc 316  Q
    |||||| ||||||||||||    
T  3819131 gctacctcaactctctctc 3819149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 6025808 - 6025691
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagt-tttcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||| |||||||||||||||||||||||| || |||| | |||||||| |||| |||||||| | ||||    ||||||||| ||||  |||    
T  6025808 catatttctatccaactcattaatctctagatcttttttactagtatctcttatagtttttctaggtcttcctctgc----ctctagtgatttgactacc 6025713  T
Q  204 ctccatctgatctactctcctt 225  Q
    || |||||||||||||||||||    
T  6025712 ctacatctgatctactctcctt 6025691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 30834057 - 30834173
Alignment:
Q  106 atatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccc 204  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||| |||||||| | || ||||| ||    || ||||  |||     
T  30834057 atatttctatccaactcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtcttcctctccctctatc----gatttgactacct 30834152  T
Q  205 tccatctgatctactctcctt 225  Q
    |||||||||||||||||||||    
T  30834153 tccatctgatctactctcctt 30834173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 105 - 316
Target Start/End: Complemental strand, 43423922 - 43423708
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||| |||||| ||||||||||||||||  |||| || | |||| ||  |||| |||||||| | || |||||    ||||| ||||  ||     
T  43423922 catatttctatccaactcactaatctctagatctttcttaatggtctctcttgtaatttttctaggtcttcctctacctct----agtgatttgactact 43423827  T
Q  204 ctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggc 297  Q
     |||||||  |||||||| ||| |||||||||||||      ||||||||||||  ||||||||||||||| |||||||| ||| |||||||  |||||     
T  43423826 atccatctagtctactctacttactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggt 43423727  T
Q  298 gctaccccaactctctctc 316  Q
    | |||||||||||||||||    
T  43423726 gttaccccaactctctctc 43423708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 14225985 - 14226120
Alignment:
Q  185 ctctagtgaattgataaccctccatctgatctactctccttgctacataatctact------ctctctacatgctcaaaccacctaagccaagtttccat 278  Q
    ||||||||| ||||  || |||||| ||||||||||||||| ||||| |||||||       |||||||||||| ||||||||||||||| | ||||||     
T  14225985 ctctagtgatttgactacgctccatgtgatctactctccttactacaaaatctacaggaatcctctctacatgcccaaaccacctaagcctattttccac 14226084  T
Q  279 catattttctaagataggcgctaccccaactctctc 314  Q
    ||| ||||||| |||||| |||||  ||||||||||    
T  14226085 catcttttctatgataggtgctactgcaactctctc 14226120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 1661495 - 1661419
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||||||||||| || |||| | |||||| ||| |||||||  ||||| |||||||||||||||||||    
T  1661495 tctctctacatgctcaaaccatctgagcctattttccaccatcttttctactataggtgctaccccaactctctctc 1661419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 10569223 - 10569318
Alignment:
Q  185 ctctagtgaattgataaccctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagttt 274  Q
    ||||||||| ||||| ||||||||||| |||||| |||| | ||||| |||||||      ||||||||||||| |||||||||||||||||||||    
T  10569223 ctctagtgatttgattaccctccatctaatctaccctccgtactacagaatctacaggtcttctctctacatgcccaaaccacctaagccaagttt 10569318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 17275261 - 17275185
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||||||||||||||||||||  || |||||||  ||||  |||||||||| ||||||||    
T  17275261 tctctctacatgcacaaaccacctaagccaagtttccacaatcttttctactatagaagctaccccaaatctctctc 17275185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 306
Target Start/End: Original strand, 48431580 - 48431689
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    ||||||||||||| |||||| || ||||| |||||||      ||||||||||||| ||||||||||||||| | |||||| ||| |||||||  |||||    
T  48431580 cctccatctgatcaactctctttactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactatagg 48431679  T
Q  297 cgctacccca 306  Q
     |||||||||    
T  48431680 ggctacccca 48431689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 2544707 - 2544588
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    ||||||||||||||||||||||| ||| | ||||||       ||||||||||||  ||||||||||||| |   |||||| ||| |||||||  |||||    
T  2544707 cctccatctgatctactctccttactatagaatctataggtcttctctctacatgtccaaaccacctaagtctgttttccaccatcttttctactatagg 2544608  T
Q  297 cgctaccccaactctctctc 316  Q
     |||||||||||||||||||    
T  2544607 tgctaccccaactctctctc 2544588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 8203226 - 8203282
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||    
T  8203226 aactcattaatctctagatcttttttaatagtttctcttatagtttttctaggtctt 8203282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 8342961 - 8343029
Alignment:
Q  106 atatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    ||||||||||| |||||||||||||||||||||||  |||| |||| |||||||| |||| ||||||||    
T  8342961 atatttctatccaactcattaatctctagatctttattaattgtttctcttatagtttttctaggtctt 8343029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 42501316 - 42501183
Alignment:
Q  100 tatttcatatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattga 198  Q
    |||| |||||||||||| ||||||||||||| |||||||||  ||||| ||| |||||||| |||| ||||| || | || |    ||||| ||| ||||    
T  42501316 tattccatatttctatccaactcattaatctatagatctttcttaataatttctcttatagtttttctaggttttcctctac----ctctaatgatttga 42501221  T
Q  199 taaccctccatctgatctactctccttgctacataatc 236  Q
      ||||||||||||| ||||||||||| ||||| ||||    
T  42501220 ctaccctccatctgaactactctcctttctacagaatc 42501183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 13827934 - 13828009
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    |||||||||||| ||||||||||||| || |||||||| ||| |||||||  ||||| ||| |||||| |||||||    
T  13827934 tctctctacatgttcaaaccacctaaccctagtttccaccatcttttctactataggtgctgccccaaatctctct 13828009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 27704116 - 27704081
Alignment:
Q  203 cctccatctgatctactctccttgctacataatcta 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  27704116 cctccatctgatctactctccttgctacataatcta 27704081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 39525842 - 39525775
Alignment:
Q  244 tctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactct 311  Q
    |||||||| ||||||||||||| |||||||  |||||| |||||||  ||||| ||||||||||||||    
T  39525842 tctacatgttcaaaccacctaaaccaagttctcatcatcttttctacaataggtgctaccccaactct 39525775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 40419748 - 40419628
Alignment:
Q  202 ccctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatag 295  Q
    |||||||||||| |||||||||||||||||||||| ||      ||||||||||||| |||||||| |||| | |||| | | ||| | |||||  |||     
T  40419748 ccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaaccacttaagtctagttactaccatctattctactataa 40419649  T
Q  296 gcgctaccccaactctctctc 316  Q
    |  ||||||||||||||||||    
T  40419648 gttctaccccaactctctctc 40419628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 9509383 - 9509307
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||| ||||||||| | |||  | ||| |||||||  ||||| |||||||||||||||||||    
T  9509383 tctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgctaccccaactctctctc 9509307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 19969304 - 19969360
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||||||||||||||||||  ||||||||| |||||||| |||| ||||||||    
T  19969304 aactcattaatctctagatctttgttaatagtttctcttatagtttttctaggtctt 19969360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 32404618 - 32404674
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||||||||||| ||||||  ||||||||| |||||||| |||||||||||||    
T  32404618 aactcattaatctctaaatctttcctaatagtttctcttatagtttttgtaggtctt 32404674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 43240596 - 43240672
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||||||||| | ||||||| | |||| ||||  |||||||  ||||| |||||||| ||||||||||    
T  43240596 tctctctacatgctcaaactatctaagcctattttctatcaatttttctactataggtgctacccccactctctctc 43240672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 51812590 - 51812514
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| |||| ||| |||||| |||||||| ||| |||||||  ||||  | |||||||||||||||||    
T  51812590 tctctctacatgcccaaatcacataagcctagtttccaccatcttttctactatagttgttaccccaactctctctc 51812514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 6573348 - 6573468
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttttct-tatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccatctgatct 216  Q
    |||||||||||| |||||  |||  |||||||||||  | ||| ||||||||||||| ||||  ||  ||||||||| || || |||||||||||||| |    
T  6573348 aactcattaatccctagacatttcataatagttttccatttagtttttgtaggtcttcccct--ctgcctctagtgatttaattaccctccatctgattt 6573445  T
Q  217 actctccttgctacataatctac 239  Q
    |||||| || ||||| |||||||    
T  6573446 actctctttactacaaaatctac 6573468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 8676944 - 8677003
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattt 163  Q
    ||||||||  || |||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  8676944 catatttcggtccaactcattaatctctaaatcttttttaatagtttctcttatagattt 8677003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 17640209 - 17640260
Alignment:
Q  185 ctctagtgaattgataaccctccatctgatctactctccttgctacataatc 236  Q
    ||||||||||||||   |||||||||||||||||||||||| ||||| ||||    
T  17640209 ctctagtgaattgactcccctccatctgatctactctccttactacaaaatc 17640260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 39140585 - 39140510
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    ||||||||||||| ||||||||||||||||| |||    ||| |||||||  ||||| ||||| ||||||||||||    
T  39140585 tctctctacatgcccaaaccacctaagccaattttttgccatcttttctactataggtgctacgccaactctctct 39140510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 17267927 - 17267989
Alignment:
Q  254 caaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||||||||||||||  || |||||||  ||||  |||||||||| ||||||||    
T  17267927 caaaccacctaagccaagtttccacaatcttttctactatagatgctaccccaaatctctctc 17267989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 40920608 - 40920642
Alignment:
Q  105 catatttctatcaaactcattaatctctagatctt 139  Q
    |||||||||||| ||||||||||||||||||||||    
T  40920608 catatttctatccaactcattaatctctagatctt 40920642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 43898338 - 43898304
Alignment:
Q  202 ccctccatctgatctactctccttgctacataatc 236  Q
    |||||||||||||||||||||||| ||||||||||    
T  43898338 ccctccatctgatctactctccttactacataatc 43898304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 478881 - 478812
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||| ||| ||| |||||||||| ||||| | ||||  ||||||||| ||||||||||||||||||||||    
T  478881 catacttccatccaactcattaacctctaaaactttcctaatagtttctcttatagattttgtaggtctt 478812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 853871 - 853944
Alignment:
Q  112 ctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctct 184  Q
    ||||| |||||| ||||||||||||| ||  ||||||||| || |||||||||| |||||||| | ||||||||    
T  853871 ctatccaactcactaatctctagatccttcttaatagtttctcgtatagattttttaggtcttcctctgcctct 853944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 6299478 - 6299507
Alignment:
Q  111 tctatcaaactcattaatctctagatcttt 140  Q
    ||||||||||||||||||||||||||||||    
T  6299478 tctatcaaactcattaatctctagatcttt 6299507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 36340035 - 36340096
Alignment:
Q  255 aaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||| || | |||||| ||| |||||||| ||||| ||||| |||||||||||||    
T  36340035 aaaccacctaaacctattttccaccatcttttctaatataggtgctacaccaactctctctc 36340096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 1210810 - 1210734
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  1210810 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 1210734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 25460198 - 25460226
Alignment:
Q  105 catatttctatcaaactcattaatctcta 133  Q
    |||||||||||||||||||||||||||||    
T  25460198 catatttctatcaaactcattaatctcta 25460226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 32231171 - 32231247
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  32231171 tctctctacatgcccaaaccatctaagcctattttctaccaatttttctactataggtgctacccccactctctctc 32231247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 34792566 - 34792642
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  34792566 tctctctacatgcccaaaccatctaagcctactttctaccaacttttctactataggtgctacccccactctctctc 34792642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 48861456 - 48861488
Alignment:
Q  105 catatttctatcaaactcattaatctctagatc 137  Q
    |||||||||||| ||||||||||||||||||||    
T  48861456 catatttctatccaactcattaatctctagatc 48861488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 19262590 - 19262725
Alignment:
Q  185 ctctagtgaattgataaccctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccat 278  Q
    ||||||||| ||||  || |||||||||||||||||| ||| ||||| |||||||      |||||||||||||||||||||||||||||||||||| |     
T  19262590 ctctagtgatttgactacactccatctgatctactcttcttactaca-aatctacaggtcttctctctacatgctcaaaccacctaagccaagtttctac 19262688  T
Q  279 catattttctaagataggcgctaccccaactctctct 315  Q
    ||| |||||||  ||||| ||||||||||||||||||    
T  19262689 catcttttctacaataggtgctaccccaactctctct 19262725  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 28021073 - 28020953
Alignment:
Q  202 ccctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatag 295  Q
    |||||||||| |||||||||||||  |||| || ||||      ||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||     
T  28021073 ccctccatctaatctactctccttattacagaacctacaaatcttctctctacatgcccaaaccacctaagccaagtttccaccatcttttctacgataa 28020974  T
Q  296 gcgctaccccaactctctctc 316  Q
    | |||||||||||||| ||||    
T  28020973 gtgctaccccaactctttctc 28020953  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 316
Target Start/End: Original strand, 28628025 - 28628226
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccatctgatct 216  Q
    |||||||||||||||| ||||||  ||||||||| |||||||| |||| |||||||| | || |    |||| |||| ||||  | |||||||| |||||    
T  28628025 aactcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtcttcctctac----ctcttgtgatttgactatcctccatcggatct 28628120  T
Q  217 actctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactc 310  Q
    ||||||||| |||||||||||||      ||||| ||||||| ||||||||||||||||| |||||| |||  ||||||   |||| ||||| |||||||    
T  28628121 actctccttactacataatctacaggttttctctttacatgcccaaaccacctaagccaattttccaccatcatttctactctaggtgctactccaactc 28628220  T
Q  311 tctctc 316  Q
     |||||    
T  28628221 cctctc 28628226  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 39812065 - 39811946
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    ||||||||||||||||||||||| ||| | |||||||      ||||||||||||| ||||| ||||||||| ||||| || ||| ||||||| ||||||    
T  39812065 cctccatctgatctactctccttactatagaatctacatctcttctctctacatgcccaaactacctaagccgagttttcaccattttttctatgatagg 39811966  T
Q  297 cgctaccccaactctctctc 316  Q
     ||| |||||||||||||||    
T  39811965 tgctgccccaactctctctc 39811946  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 47848782 - 47848663
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    |||||||||||||||||||||||  |||| ||| |||      |||||| |||||| ||||||||||||||| | |||||| ||| |||||||  |||||    
T  47848782 cctccatctgatctactctccttagtacagaatttacaagtcttctctcgacatgcccaaaccacctaagcctattttccaccatcttttctactatagg 47848683  T
Q  297 cgctaccccaactctctctc 316  Q
    ||||||||||||||||||||    
T  47848682 cgctaccccaactctctctc 47848663  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 1740927 - 1740790
Alignment:
Q  185 ctctagtgaattgataaccctccatctgatctactctccttgctacataatctac---tctc---tctacatgctcaaaccacctaagccaagtttccat 278  Q
    ||||||||| ||||  ||||||||||||||||||||||||| ||||| |||| ||   ||||   ||||||| | ||||||||||||||| ||||||||     
T  1740927 ctctagtgatttgactaccctccatctgatctactctccttactacaaaatccacaattctcctatctacatacccaaaccacctaagcctagtttccac 1740828  T
Q  279 catattttctaagataggcgctaccccaactctctctc 316  Q
    |||||||||||   |||  ||||||| |||||||||||    
T  1740827 catattttctactgtagatgctacccaaactctctctc 1740790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 315
Target Start/End: Complemental strand, 30633071 - 30632958
Alignment:
Q  205 tccatctgatctactctccttgctacataatctac---tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgcta 301  Q
    ||||||| ||||||||||||| ||||| |||| ||   ||||||||||||| ||||||| ||||||| || ||||| ||| |||| || |||||| ||||    
T  30633071 tccatctaatctactctccttactacagaatccacacttctctctacatgcccaaaccatctaagccgagcttccaccattttttttatgataggtgcta 30632972  T
Q  302 ccccaactctctct 315  Q
    |||| |||||||||    
T  30632971 ccccgactctctct 30632958  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 36514363 - 36514499
Alignment:
Q  185 ctctagtgaattgataaccctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccat 278  Q
    ||||||||| ||||   ||||| |||||||||||||||| | ||||| |||| ||      ||||||||||||| ||||||||||||| | |||||| |     
T  36514363 ctctagtgacttgactcccctctatctgatctactctccatactacagaatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctac 36514462  T
Q  279 catattttctaagataggcgctaccccaactctctct 315  Q
    ||| |||||||  ||||| ||||||||||||||||||    
T  36514463 catcttttctactataggtgctaccccaactctctct 36514499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 27021909 - 27021985
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||||||||||| ||||| || ||  |||||||  ||||| |||||||||||||||||||    
T  27021909 tctctctacatgcccaaaccacctaagcctagttttcaccaacttttctactataggtgctaccccaactctctctc 27021985  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 42187568 - 42187462
Alignment:
Q  213 atctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctacccca 306  Q
    ||||||||||||| |||||||||||||      ||||| ||||||| ||||||||||||||| | |||||| ||| |||||||  ||||| ||||||||     
T  42187568 atctactctccttactacataatctacaggccttctctttacatgcccaaaccacctaagcctattttccaccatcttttctattataggtgctaccccg 42187469  T
Q  307 actctct 313  Q
    |||||||    
T  42187468 actctct 42187462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 38920859 - 38920789
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactc 310  Q
    ||||||||||||| |||||||| |||||| |||||||| ||| |||||||  ||||| |||||||||||||    
T  38920859 tctctctacatgcccaaaccacttaagcctagtttccaccatcttttctactataggtgctaccccaactc 38920789  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 7220809 - 7220760
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  7220809 tctctctacatgcccaaaccacctaagccaagtttctatcatcttttcta 7220760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 27893725 - 27893840
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac---tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgc 299  Q
    ||||||||||||||||||||||   |||| |||||||   ||| |||||||| |||||||||||||||| | |||||| ||| | |||||  ||||| |     
T  27893725 cctccatctgatctactctcctaagtacaaaatctacagatctttctacatgttcaaaccacctaagcctattttccaccatctattctactataggtgt 27893824  T
Q  300 taccccaactctctct 315  Q
    |||| |||||||||||    
T  27893825 tacctcaactctctct 27893840  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 29653624 - 29653671
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||    
T  29653624 tcatatttctatctaactcattaatctctagatctttcttaatagttt 29653671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 40139026 - 40139073
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  40139026 tcatatttctatcaaacgcattaatctctagatctttcttaatagttt 40139073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 6420668 - 6420744
Alignment:
Q  207 catctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttcca 277  Q
    ||||||||||||||||||| |||||  ||||||      ||||||||||||| ||||||||||||||| ||||||||    
T  6420668 catctgatctactctccttactacagtatctacaagtcttctctctacatgcccaaaccacctaagcctagtttcca 6420744  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 24549910 - 24549951
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcat 281  Q
    ||||||||||||| ||||||||||||||| ||||||||||||    
T  24549910 tctctctacatgcccaaaccacctaagcctagtttccatcat 24549951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 6374933 - 6374857
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||||||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  6374933 tctctctacatgctcaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 6374857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 28858247 - 28858179
Alignment:
Q  106 atatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    ||||||||||| |||| ||||||||||||||||||  ||||||||| |||||||| |||| || |||||    
T  28858247 atatttctatccaacttattaatctctagatctttcttaatagtttgtcttatagtttttctaagtctt 28858179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 40169712 - 40169640
Alignment:
Q  242 tctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctc 314  Q
    ||||||||||| ||||||||||||||| | |||||| ||| |||||||  ||| | |||||||||| ||||||    
T  40169712 tctctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctaccccaattctctc 40169640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 43282473 - 43282397
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| |||  |||||||||| |||||||| |   |||||||  ||||| |||||||||||||||||||    
T  43282473 tctctctacatgcccaattcacctaagcctagtttccaccgacttttctactataggtgctaccccaactctctctc 43282397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 7189443 - 7189518
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    ||||||||||||| ||||||||||||||  | |||| | ||| |||||||  ||||| || |||||||||||||||    
T  7189443 tctctctacatgcccaaaccacctaagcttattttctaccatcttttctactataggtgcgaccccaactctctct 7189518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 9191979 - 9191932
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    |||||||||||||||| | ||||||||||||||||||  |||||||||    
T  9191979 tcatatttctatcaaatttattaatctctagatctttcttaatagttt 9191932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 9797921 - 9797995
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    ||||||||||||  ||||||||||||||||| ||| ||  || |||||||  |||||| |||||||||||||||||    
T  9797921 tctctctacatgtccaaaccacctaagccaa-ttttcagaatcttttctacaataggcactaccccaactctctct 9797995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 24549767 - 24549822
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatag 159  Q
    |||||||| ||| |||||||||||||||||||||||  ||||||||| ||||||||    
T  24549767 catatttcaatccaactcattaatctctagatctttcttaatagtttctcttatag 24549822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 30200043 - 30200078
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttt 140  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30200043 catatttatatcaaactcattaatctctagatcttt 30200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 41483554 - 41483507
Alignment:
Q  242 tctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    ||||||||||| |||||||| |||||| |||||||||||| |||||||    
T  41483554 tctctacatgcccaaaccacttaagccgagtttccatcattttttcta 41483507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 45601680 - 45601610
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    ||||||||  ||| |||||||||||||||||||||||  |||| |||| |||||||| |||| ||||||||    
T  45601680 tcatattttgatccaactcattaatctctagatctttcttaatggtttctcttatagtttttctaggtctt 45601610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 12966219 - 12966150
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||||||| || ||||||||||||| || |||  ||||||||| |||||||| |||| ||||||||    
T  12966219 catatttctatccaaatcattaatctctaaatatttcttaatagtttctcttatagtttttctaggtctt 12966150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 38135292 - 38135361
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    ||||||||  || |||||||||||||||| ||||||| ||||||||| |||||||  |||| ||||||||    
T  38135292 catatttcggtccaactcattaatctctaaatcttttttaatagtttctcttatactttttctaggtctt 38135361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 41948581 - 41948532
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    ||||||||||||| |||||||| |||||| |||||||| ||| |||||||    
T  41948581 tctctctacatgcccaaaccacttaagcctagtttccaccatcttttcta 41948532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 12966087 - 12966039
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttct 288  Q
    ||||||||||||| ||||||||||||||  |||||||| ||| ||||||    
T  12966087 tctctctacatgcccaaaccacctaagcatagtttccaccatcttttct 12966039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 13859225 - 13859301
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  13859225 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 13859301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 18605363 - 18605427
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccc 304  Q
    |||||||||||||||||||||||||||   |||||| | ||| |||| ||| ||||| |||||||    
T  18605363 tctctctacatgctcaaaccacctaagtttagtttctaccatcttttataatataggtgctaccc 18605427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 18637627 - 18637563
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccc 304  Q
    |||||||||||||||||||||||||||   |||||| | ||| |||| ||| ||||| |||||||    
T  18637627 tctctctacatgctcaaaccacctaagtttagtttctaccatcttttataatataggtgctaccc 18637563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 18651061 - 18650997
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccc 304  Q
    |||||||||||||||||||||||||||   |||||| | ||| |||| ||| ||||| |||||||    
T  18651061 tctctctacatgctcaaaccacctaagtttagtttctaccatcttttataatataggtgctaccc 18650997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 22174203 - 22174143
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagatttt 164  Q
    |||||||||||| || ||||||||||||||||||||  | ||||||| |||||||| ||||    
T  22174203 catatttctatctaattcattaatctctagatctttgtttatagtttctcttatagttttt 22174143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 34869485 - 34869409
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  34869485 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 34869409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 36136829 - 36136753
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    |||||||| |||| ||||| ||||||| | | |||| | ||| |||||||  ||||| |||||||||||||||||||    
T  36136829 tctctctatatgcccaaacaacctaagactattttctaccatcttttctactataggtgctaccccaactctctctc 36136753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 37439570 - 37439634
Alignment:
Q  252 ctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||| ||||||||| | ||| |||||| |||||||  ||||| ||||| |||||||||||||    
T  37439570 ctcaaactacctaagcctattttacatcatcttttctaccataggtgctactccaactctctctc 37439634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 40830392 - 40830336
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    ||||||||||| |||||||| ||  ||||||||| ||||||||||||| ||||||||    
T  40830392 aactcattaatttctagatccttcttaatagtttctcttatagattttctaggtctt 40830336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 41461298 - 41461242
Alignment:
Q  109 tttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagatttt 164  Q
    |||||||| |||||||||||| ||||||||||  ||||||||| |||||||| ||||    
T  41461298 tttctatccaactcattaatcactagatctttattaatagtttctcttatagttttt 41461242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 49029341 - 49029265
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  49029341 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 49029265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 315
Target Start/End: Complemental strand, 42092713 - 42092507
Alignment:
Q  112 ctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccatc 210  Q
    ||||| |||| ||||||||||| ||||||| ||||||||| || ||||| |||| |||||||   ||||  ||||| |||||||||||  ||||||||||    
T  42092713 ctatccaactaattaatctctacatcttttttaatagtttctcctatagtttttctaggtcta--cctg--tctctatagtgaattgactaccctccatc 42092618  T
Q  211 tgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccc 304  Q
    | ||||||||||||| ||||| |||||||      ||||||||||||| || | ||||||| |  |||||| | ||| |||||||  |||||||||||||    
T  42092617 taatctactctccttactacaaaatctacaagccttctctctacatgcccagatcacctaatcttagtttctaccatcttttctagtataggcgctaccc 42092518  T
Q  305 caactctctct 315  Q
    |||||||||||    
T  42092517 caactctctct 42092507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 278
Target Start/End: Original strand, 26784419 - 26784595
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||  |||||||||||||||| ||||||  ||||||||| |||||||| |||| |||||||||| ||||    ||||||||| ||||  |||    
T  26784419 catatttctattcaactcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctttctctgc----ctctagtgatttgactacc 26784514  T
Q  204 ctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccat 278  Q
    |||||||| |||||| |||||| ||||| |||| ||      |||||||| |||| ||||| ||||||||| |||||||||    
T  26784515 ctccatcttatctaccctccttactacaaaatccacatatcttctctctaaatgcacaaacaacctaagcctagtttccat 26784595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 316
Target Start/End: Complemental strand, 43832293 - 43832088
Alignment:
Q  113 tatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccatct 211  Q
    |||| |||||||||||||||||||| ||  ||||||||| |||||||| || | |||||||| | |||| |||    | ||| ||||| || ||||||||    
T  43832293 tatccaactcattaatctctagatccttcttaatagtttctcttatagtttgtttaggtcttcctctgcgtct----actgatttgattactctccatct 43832198  T
Q  212 gatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctacccc 305  Q
    |||||||||||||  |||||||||| ||      ||||| ||||||| |||| |||||||||| |||||||| |||||||| ||  ||||| | ||||||    
T  43832197 gatctactctcctaactacataatccacatgttttctctgtacatgcccaaatcacctaagcctagtttcca-catattttttactataggtgatacccc 43832099  T
Q  306 aactctctctc 316  Q
    |||||||||||    
T  43832098 aactctctctc 43832088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 277
Target Start/End: Original strand, 12026083 - 12026259
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataac 202  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| || ||||| || | ||||||||   | ||    ||| |||||  |||  ||    
T  12026083 tcatatttctatcaaactcattaatctctagatctttcttaatagtttctcctatagtttctctaggtcttaatccgc----ctccagtgatgtgactac 12026178  T
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttcca 277  Q
    || ||||||||||||||||||||  |||| |||||||      |||||||||||| |||||||||||||||| ||||||||    
T  12026179 ccaccatctgatctactctccttagtacaaaatctacaggtcttctctctacatggtcaaaccacctaagcctagtttcca 12026259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 19235063 - 19235191
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||| || ||||||||||||||||||||   |||||||| |||||||| |||| ||||||||  |||  || |||||||||| ||||   ||    
T  19235063 catatttctatccaaatcattaatctctagatctttctcaatagtttctcttatagtttttctaggtctt--cct--ctatctctagtgatttgactccc 19235158  T
Q  204 ctccatctgatctactctccttgctacataatc 236  Q
    ||||||||||||||||||| || ||||| ||||    
T  19235159 ctccatctgatctactctctttactacagaatc 19235191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 11412784 - 11412710
Alignment:
Q  242 tctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    |||||| |||| ||||| ||||||||| | |||||| |||||||||||  ||||| |||||||||||||||||||    
T  11412784 tctctaaatgcccaaacaacctaagcctattttccaccatattttctactataggtgctaccccaactctctctc 11412710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 316
Target Start/End: Original strand, 37481790 - 37481910
Alignment:
Q  202 ccctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatag 295  Q
    |||||||||||||||||||||||  ||||| |||  ||      ||||||||||||||||||||||||||||| || ||| | ||| |||| ||  ||||    
T  37481790 ccctccatctgatctactctcctaactacaaaattcacaagtcttctctctacatgctcaaaccacctaagcctaggttcaaccatcttttttactatag 37481889  T
Q  296 gcgctaccccaactctctctc 316  Q
    |  ||||||||||||||||||    
T  37481890 gaactaccccaactctctctc 37481910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 13240962 - 13241038
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||||||||||| |||||||| ||| |||||||| |||   ||||| |||| ||||||||    
T  13240962 tctctctacatgcccaaaccacctaagcctagtttccaccatcttttctaacatacttgctactccaattctctctc 13241038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 43752121 - 43752240
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    ||||||||||||||||||||| | ||||||||||||       ||||||||||||  |||| |||||||||| | |||| | ||  |||||||  |||||    
T  43752121 cctccatctgatctactctccctactacataatctataggtcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactatagg 43752220  T
Q  297 cgctaccccaactctctctc 316  Q
     |||||||||||||||||||    
T  43752221 tgctaccccaactctctctc 43752240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 42582518 - 42582565
Alignment:
Q  106 atatttctatcaaactcattaatctctagatcttttgtaatagttttc 153  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  42582518 atatttctatcaaactcattaatctctacatcttttttaacagttttc 42582565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 33504427 - 33504312
Alignment:
Q  105 catatttctatcaaactcattaa-tctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataac 202  Q
    |||||||| ||| |||| ||||| |||||||||||||  ||||||||| |||||||| |||| ||||| |||| ||||||||    |||||  |||  ||    
T  33504427 catatttcaatccaacttattaaatctctagatctttcttaatagtttctcttatagtttttctaggtttttctctgcctct----agtgatctgactac 33504332  T
Q  203 cctccatctgatctactctc 222  Q
    ||||||||||||||||||||    
T  33504331 cctccatctgatctactctc 33504312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 33287624 - 33287555
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||| ||| ||||||||||| |||||||||||  ||||||||| |||||||| |||| ||||||||    
T  33287624 catatttcgatctaactcattaatttctagatctttcttaatagtttctcttatagtttttctaggtctt 33287555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 42149824 - 42149900
Alignment:
Q  207 catctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttcca 277  Q
    ||||||||||||||||||| ||||| ||||||       ||||||||||| ||||||||||||||||| ||||||||    
T  42149824 catctgatctactctccttactacagaatctataggatttctctctacatactcaaaccacctaagcctagtttcca 42149900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 3481249 - 3481178
Alignment:
Q  203 cctccatctgatctactctccttgctacataatcta------ctctctctacatgctcaaaccacctaagcc 268  Q
    ||||||||||||||||||||||||||||| ||||||       ||||||||||||  |||||||||||||||    
T  3481249 cctccatctgatctactctccttgctacagaatctataggtcttctctctacatgtccaaaccacctaagcc 3481178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 29548704 - 29548833
Alignment:
Q  93 tctatattatttcatatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagt 191  Q
    ||||||||||  || ||||||||||||| |||||||||||| ||||||  ||||| ||| |||||||| ||||  ||||||| | |||| ||||    ||    
T  29548704 tctatattataccacatttctatcaaacacattaatctctaaatctttcttaataatttctcttatagttttttcaggtcttcctctgcttctc----gt 29548799  T
Q  192 gaattgataaccctccatctgatctactctcctt 225  Q
    || ||||  ||||||||| ||||||||| |||||    
T  29548800 gatttgactaccctccatttgatctactatcctt 29548833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 8197619 - 8197666
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    ||||||||||||| ||||||||||||| |||||||||  |||||||||    
T  8197619 tcatatttctatccaactcattaatctttagatctttcttaatagttt 8197666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 8202379 - 8202426
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    ||||||||||||| ||||||||||||| |||||||||  |||||||||    
T  8202379 tcatatttctatccaactcattaatctttagatctttcttaatagttt 8202426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 31254492 - 31254445
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    ||||||||||||  |||||||||||||||||||||||  |||||||||    
T  31254492 tcatatttctattcaactcattaatctctagatctttcttaatagttt 31254445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 18188845 - 18188771
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctc 314  Q
    ||||| ||||||| ||||||||||||| | || ||||| ||| |||||||  | ||| |||||||||||||||||    
T  18188845 tctctttacatgcccaaaccacctaagtcgagcttccaccatcttttctagaagaggtgctaccccaactctctc 18188771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 32402701 - 32402667
Alignment:
Q  107 tatttctatcaaactcattaatctctagatctttt 141  Q
    |||||||||| ||||||||||||||||||||||||    
T  32402701 tatttctatccaactcattaatctctagatctttt 32402667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 37470212 - 37470343
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||| ||| ||||||||||||||||||||| |  ||||||||| |||||||| ||||  ||||||| | || |    | |||||||  |||  |||    
T  37470212 catatttcgatccaactcattaatctctagatctgtcctaatagtttctcttatagttttttcaggtcttcctctac----cactagtgatctgactacc 37470307  T
Q  204 ctccatctgatctactctccttgctacataatctac 239  Q
     ||||||| |||||||||||||  ||||||||||||    
T  37470308 ttccatctaatctactctccttaatacataatctac 37470343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 38860288 - 38860251
Alignment:
Q  201 accctccatctgatctactctccttgctacataatcta 238  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  38860288 accctccatctcatctactctccttcctacataatcta 38860251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 41779525 - 41779574
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    |||||||||||| |||||||||||||| | |||||||| ||| |||||||    
T  41779525 tctctctacatgatcaaaccacctaagtcgagtttccaccattttttcta 41779574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 43260529 - 43260476
Alignment:
Q  186 tctagtgaattgataaccctccatctgatctactctccttgctacataatctac 239  Q
    |||||||| ||||  ||||||||||||||||||||||||| ||| | |||||||    
T  43260529 tctagtgatttgactaccctccatctgatctactctccttactatagaatctac 43260476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 1626399 - 1626343
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatag 159  Q
    |||||||| |||  |||||||||||||||||||||||  ||||||||| ||||||||    
T  1626399 tcatatttttatacaactcattaatctctagatctttcttaatagtttctcttatag 1626343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 3866137 - 3866057
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctccaat 320  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||| ||  ||||| |||||||| ||||||||||||||    
T  3866137 tctctctacatgcacaaaccatctaagcctattttctaccaacttttttactataggtgctacccccactctctctccaat 3866057  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 18188956 - 18188920
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttt 140  Q
    ||||||||||||| | |||||||||||||||||||||    
T  18188956 tcatatttctatccagctcattaatctctagatcttt 18188920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 26670958 - 26670902
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||||||||||| ||||||  ||||||||| | |||||| |||||||||||||    
T  26670958 aactcattaatctctaaatctttcttaatagtttcttttatagtttttgtaggtctt 26670902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 45077863 - 45077827
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac 239  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  45077863 cctccatctgatctactctccttactacaaaatctac 45077827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 307
Target Start/End: Original strand, 46431759 - 46431957
Alignment:
Q  106 atatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccc 204  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||| |||||||| |||| |||    ||| ||||    ||||||||| ||||  | ||    
T  46431759 atatctctatccaactcattaatctctagatcttttttaatagtttctcttatagtttttctag----ttctctgc----ctctagtgatttgagtatcc 46431850  T
Q  205 tccatctgatctactctccttgctacataatctac----tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgct 300  Q
    ||||||| ||||||||||||| ||||| |||||||     |||||||||||| ||||||||||||||| |||||||||  | |||||||  | | |||||    
T  46431851 tccatcttatctactctccttactacagaatctacagatcctctctacatgcccaaaccacctaagccgagtttccattgtcttttctacaagaagcgct 46431950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 21200751 - 21200540
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||| ||||||||||| |||||||||||   |||||||| ||| |||| |||| ||||||||  |||  ||| | ||||||| ||||  ||     
T  21200751 catatttctatccaactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctt--cct--ctccccctagtgatttgactact 21200656  T
Q  204 ctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggc 297  Q
    |||||| ||||||||||||||| || || |||||||      ||||||||||||| ||||||||||||| | |||||||| ||| |||||||   ||||     
T  21200655 ctccatgtgatctactctccttactgcagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttcta--ctaggt 21200558  T
Q  298 gctaccccaactctctct 315  Q
    |||||||||| |||||||    
T  21200557 gctaccccaattctctct 21200540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 42026615 - 42026790
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||| |||||||||||| ||| |||  |  ||||||||| |||||||| |||  | |||||| | ||||||||    || ||  |||| | |    
T  42026615 catatttctatctaactcattaatccctatatcaatcttaatagtttctcttatagctttgattggtcttcctctgcctct----agggatgtgattatc 42026710  T
Q  204 ctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttcca 277  Q
    |||| ||||||||||||||||| ||| |||||||||      |||||||||| |||||||||||||||||| ||||||||    
T  42026711 ctccgtctgatctactctccttactaaataatctacaagttttctctctacaagctcaaaccacctaagcctagtttcca 42026790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 45289265 - 45289386
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttcta--agata 294  Q
    ||||||||||||||||||| ||| ||||| |||||||      ||||||||| ||| ||||||||||||||| | |||||| ||| |||||||    |||    
T  45289265 cctccatctgatctactcttcttactacaaaatctacaagtgttctctctacgtgcccaaaccacctaagcctattttccaccatcttttctactgaata 45289364  T
Q  295 ggcgctaccccaactctctctc 316  Q
    || |||||||||||||||||||    
T  45289365 ggtgctaccccaactctctctc 45289386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 29475888 - 29475811
Alignment:
Q  106 atatttctatcaaactcattaatctctagatcttttgtaatagttttcttatagattttgtaggtctttccctgcctct 184  Q
    ||||||| ||| |||||||||||||||||||||||  |||||| |||||||||| |||| |||||||| | ||||||||    
T  29475888 atatttcaatccaactcattaatctctagatctttcttaatag-tttcttatagcttttctaggtcttcctctgcctct 29475811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 315
Target Start/End: Original strand, 36820133 - 36820253
Alignment:
Q  201 accctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagata 294  Q
    |||||| || |||||||| |||||| ||||||||||||       ||||| ||||||   |||||||||||||| |||||||| ||| ||| |||| |||    
T  36820133 accctctatttgatctaccctccttactacataatctatgggtcttctctttacatgtctaaaccacctaagcctagtttccaccatctttgctaatata 36820232  T
Q  295 ggcgctaccccaactctctct 315  Q
    || ||||||||||||||||||    
T  36820233 ggtgctaccccaactctctct 36820253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 3987112 - 3987032
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctccaat 320  Q
    ||||||||||| | ||||||||||||| | |||||| | ||| |||||||  ||||| | |||||||||||||||||||||    
T  3987112 tctctctacattcccaaaccacctaagtctagtttctaccatcttttctactataggtgataccccaactctctctccaat 3987032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 50960850 - 50960922
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctc 312  Q
    ||||||||||||| ||||||||||||||| | |||| | ||| |||||||  ||||| |||||||||||||||    
T  50960850 tctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaactctc 50960922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 54365193 - 54365268
Alignment:
Q  239 ctctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    |||||||||||||| ||||||||||||| | | |||||  |||||||||||  ||||| ||||||||||||||||||    
T  54365193 ctctctctacatgcccaaaccacctaag-ctattttccgccatattttctactataggtgctaccccaactctctct 54365268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 315
Target Start/End: Complemental strand, 37228132 - 37227918
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttttc-ttatagattttgtaggtctttccctgcctctctctagtgaattgataac 202  Q
    |||||| | |||| ||||||||||| ||||  |||||  ||||||||| | |||| | |||| |||||||||| ||||||||     |||| ||||  ||    
T  37228132 tcatatctttatctaactcattaatttctaagtctttcttaatagtttcccttatcgtttttataggtctttctctgcctctg----gtgatttgactac 37228037  T
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    ||||| |||  || ||| ||||| |||||||||||||      | |||||||||||  |||||||||||||| |||||||  ||| ||||||| |||||     
T  37228036 cctccgtctattcaactgtccttactacataatctacatctattttctctacatgcagaaaccacctaagccgagtttccgccattttttctacgatagc 37227937  T
Q  297 cgctaccccaactctctct 315  Q
     ||||| ||||||||||||    
T  37227936 tgctactccaactctctct 37227918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 50249492 - 50249373
Alignment:
Q  206 ccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacc---taagccaagtttccatcatattttctaagatagg 296  Q
    |||||||||||||||||||| ||| | |||||||      || |||||||||| |||||||||   |||| | |||||||| ||| |||||||  ||| |    
T  50249492 ccatctgatctactctccttactaaagaatctacatgtcttcactctacatgcccaaaccaccacctaagtctagtttccaccatcttttctactatacg 50249393  T
Q  297 cgctaccccaactctctctc 316  Q
    ||||||||||||||||||||    
T  50249392 cgctaccccaactctctctc 50249373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 54128441 - 54128367
Alignment:
Q  242 tctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||| ||||||||||||||| | |||| | ||| |||||||  ||||| ||||||||||| |||||||    
T  54128441 tctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaacactctctc 54128367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 315
Target Start/End: Original strand, 34719252 - 34719364
Alignment:
Q  209 tctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctac 302  Q
    ||||||||||||||||| ||||| |||| ||      |||||||| ||| ||||| ||||||||   | |||||| ||| ||||||| |||||| |||||    
T  34719252 tctgatctactctccttactacaaaatcaacaggccttctctctatatgttcaaaacacctaagttgactttccaccatcttttctacgataggtgctac 34719351  T
Q  303 cccaactctctct 315  Q
    |||||||||||||    
T  34719352 cccaactctctct 34719364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 19676297 - 19676373
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    |||||||||||||  | |||||||||||||| |||| ||||| |||| ||  ||||| ||||||||||| |||||||    
T  19676297 tctctctacatgccaataccacctaagccaattttctatcatcttttgtactataggtgctaccccaacactctctc 19676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 49503771 - 49503847
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||||||||||| | |||| | ||| |||||||  ||||| ||||||  |||||||||||    
T  49503771 tctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacctgaactctctctc 49503847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 48734352 - 48734427
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    ||||||||||||| ||||||||||||||| | |||| | ||| | |||||  ||| ||||||||||||| ||||||    
T  48734352 tctctctacatgcccaaaccacctaagcctattttctaccatctgttctactatacgcgctaccccaacactctct 48734427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 36820069 - 36820127
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttc 175  Q
    |||||||||||||||||||||||  ||||||||| |||||||| |||| ||||| ||||    
T  36820069 aactcattaatctctagatctttcttaatagtttctcttatagtttttctaggtatttc 36820127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 136
Target Start/End: Complemental strand, 46140609 - 46140579
Alignment:
Q  106 atatttctatcaaactcattaatctctagat 136  Q
    |||||||||||||||||||||||||||||||    
T  46140609 atatttctatcaaactcattaatctctagat 46140579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 2340810 - 2340867
Alignment:
Q  119 actcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttc 175  Q
    ||||||||||||||||||||||  ||||||||| |||||||| |||  ||||||||||    
T  2340810 actcattaatctctagatctttcttaatagtttctcttatagttttcctaggtctttc 2340867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 6988099 - 6988063
Alignment:
Q  110 ttctatcaaactcattaatctctagatcttttgtaat 146  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  6988099 ttctatccaactcattaatctctagatcttttttaat 6988063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 19162679 - 19162735
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||||||||||| ||||||  ||||||||| ||||||||||||  ||||||||    
T  19162679 aactcattaatctctaaatctttcctaatagtttctcttatagatttcctaggtctt 19162735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 52138865 - 52138789
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  52138865 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 52138789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 316
Target Start/End: Complemental strand, 54470410 - 54470196
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||| |||||||||||||||||| ||||  |||||| || |||||||| |||| | ||||||    |||||||    ||| | ||||  ||     
T  54470410 catatttctatccaactcattaatctctagaactttattaatagattctcttatagtttttcttggtcttcttttgcctct----agtaatttgactact 54470315  T
Q  204 ctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggc 297  Q
    |||||| |||| |||||||||| ||||||||| |||      ||||||||||||| |||||||| |||| | |||||||| ||| |||||||  |||||     
T  54470314 ctccatttgatttactctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggt 54470215  T
Q  298 gctaccccaactctctctc 316  Q
    |||||||||||||||||||    
T  54470214 gctaccccaactctctctc 54470196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 28497597 - 28497479
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    ||||||||||||||||||||||| |||||||||||||      ||||||||||||| |||||||||||||||   ||||||  || |||||||  | |||    
T  28497597 cctccatctgatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacctaagcc-tttttccacaatcttttctactaaagg 28497499  T
Q  297 cgctaccccaactctctctc 316  Q
     |||||||||||||||||||    
T  28497498 tgctaccccaactctctctc 28497479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 46715546 - 46715638
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    ||||||| |||||||||||||||||||||||||| ||      ||||||||||||| || |||||||||||| |||||||| ||| |||||||    
T  46715546 cctccatatgatctactctccttgctacataatccacatgtcttctctctacatgcccacaccacctaagcctagtttccaccatcttttcta 46715638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 31339636 - 31339526
Alignment:
Q  211 tgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccc 304  Q
    ||||||||| ||||| |||||||||||||      ||||||||||||||||||||||||||||  |||||| | ||| |||||||  |||||  ||||||    
T  31339636 tgatctactatccttactacataatctacaagtcttctctctacatgctcaaaccacctaagcttagtttcgaccat-ttttctaccataggttctaccc 31339538  T
Q  305 caactctctctc 316  Q
    ||||||||||||    
T  31339537 caactctctctc 31339526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 51252678 - 51252753
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    ||||||||||||| || |||||||||||| |||||||| ||| |||||||  | ||| ||||||||||||||||||    
T  51252678 tctctctacatgcccataccacctaagcctagtttccaccatcttttctactagaggtgctaccccaactctctct 51252753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 1380432 - 1380356
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||| ||||||| | |||| | || ||||||||||||||    
T  1380432 tctctctacgtgcccaaaccacctaagccgagtttctatcatgttttctacggtaggtgttatcccaactctctctc 1380356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 6843818 - 6843774
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagt 149  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  6843818 catatttctatcaaactcattaatctctagatctttcttaatagt 6843774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 41192901 - 41192825
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| |||| |||||||| | |||||||| ||| |||||||   |||| |||||||||||||||||||    
T  41192901 tctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctaccccaactctctctc 41192825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 42293470 - 42293538
Alignment:
Q  244 tctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctc 312  Q
    ||||||| | ||||||||||||||| |||||||||||| |||||||  ||||| ||||| |||||||||    
T  42293470 tctacatacccaaaccacctaagccgagtttccatcatcttttctactataggtgctacgccaactctc 42293538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 7544601 - 7544648
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    ||||||||| |||||||||||||||||||||||||||  |||||||||    
T  7544601 tcatatttcgatcaaactcattaatctctagatctttcttaatagttt 7544648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 1427500 - 1427550
Alignment:
Q  239 ctctctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    |||||||||||||||||||||| ||||||| |||||||| ||| |||||||    
T  1427500 ctctctctacatgctcaaaccatctaagcctagtttccaccatgttttcta 1427550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 316
Target Start/End: Complemental strand, 33710127 - 33709913
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||| ||||||||||||||||||||  |  ||||||||| || ||| | |||| || |  || |||||    ||||||||||  |||  |||    
T  33710127 catatttctatccaactcattaatctctagatcagtcttaatagtttctcgtatggtttttataagcattcccctg----tctctagtgatctgactacc 33710032  T
Q  204 ctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggc 297  Q
    |||| ||||||| |||||| || ||||| |||| ||      |||||| ||||||  ||||||||||| || |||||||| ||| |||||||  |||||     
T  33710031 ctccttctgatccactctctttactacagaatccacagttcttctctccacatgcctaaaccacctaaacctagtttccaccatcttttctactataggt 33709932  T
Q  298 gctaccccaactctctctc 316  Q
    | |||||||||||||||||    
T  33709931 gttaccccaactctctctc 33709913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 26356809 - 26356699
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccatctgatct 216  Q
    |||||||||||||||||||| ||  ||| ||||| |||||||| |||| |||||||| |||| |||||    ||||| ||||   ||||||||| |||||    
T  26356809 aactcattaatctctagatccttcataacagtttctcttatagtttttctaggtcttcccctacctct----agtgatttgactcccctccatccgatct 26356714  T
Q  217 actctccttgctaca 231  Q
    ||||||||| |||||    
T  26356713 actctccttactaca 26356699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 44686789 - 44686861
Alignment:
Q  242 tctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    |||||| ||||||| |||||||||||| ||||  || ||||||| ||| ||||||| |||||||||||||||||    
T  44686789 tctctatatgctcagaccacctaagccgagttctcaccatatttgcta-gataggcactaccccaactctctct 44686861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 47147570 - 47147448
Alignment:
Q  111 tctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccat 209  Q
    |||||| |||||||||||||||||||||||  ||||||||| |  ||||| |||| |||||||| | ||||    |||||||||   ||  || ||||||    
T  47147570 tctatccaactcattaatctctagatctttcttaatagtttcttctatagtttttctaggtcttcctctgc----ctctagtgatccgactactctccat 47147475  T
Q  210 ctgatctactctccttgctacataatc 236  Q
    ||||| |||||||||| ||||||||||    
T  47147474 ctgatttactctccttactacataatc 47147448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 47611792 - 47611743
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    ||||||||||||| ||||||||||||||| | |||||||||| |||||||    
T  47611792 tctctctacatgcccaaaccacctaagcctattttccatcatcttttcta 47611743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 20047643 - 20047583
Alignment:
Q  100 tatttcatatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatag 159  Q
    ||||| |||| |||||| |||||||||||||||||||||| | ||||||||| ||||||||    
T  20047643 tatttgatatctctatccaactcattaatctctagatcttctttaatagtttctcttatag 20047583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 35555864 - 35555940
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    |||||||| |||| ||||||||||||| | |||||| | ||| |||||||  ||||| ||||||| |||||||||||    
T  35555864 tctctctaaatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacccgaactctctctc 35555940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 38903937 - 38904001
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccc 304  Q
    |||||| |||||||||||||| ||||||| |||||||| ||| ||||||| ||| || |||||||    
T  38903937 tctctccacatgctcaaaccaactaagccgagtttccaccatcttttctatgatcggtgctaccc 38904001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 40018408 - 40018476
Alignment:
Q  248 catgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||| |||||||| ||||||||||||| | ||| |||| || |||||| |||||||||| ||||||||    
T  40018408 catgcccaaaccacataagccaagtttctaccatcttttttacgataggtgctaccccaattctctctc 40018476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 42639237 - 42639313
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||  |||||||||||||||  ||||||| ||| |||||||  ||||| || |||| |||||||||||    
T  42639237 tctctctacatgtccaaaccacctaagcctggtttccaccatcttttctactataggtgcaaccctaactctctctc 42639313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 46372089 - 46372013
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||||||||| | |||||| |  |||||||| |  ||||| |||||||||||||| ||||    
T  46372089 tctctctacatgcacaaaccacctaagtctagtttctacaatattttcgactataggtgctaccccaactctatctc 46372013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 50662591 - 50662555
Alignment:
Q  105 catatttctatcaaactcattaatctctagatctttt 141  Q
    |||||||| ||||||||||||||||||||||||||||    
T  50662591 catatttcgatcaaactcattaatctctagatctttt 50662555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 28236248 - 28236173
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    ||||||||||||| ||||||| ||||||| | |||||| ||  |||||||  ||||| |||||||| |||||||||    
T  28236248 tctctctacatgcccaaaccatctaagcctattttccaccaacttttctactataggtgctacccccactctctct 28236173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 41192264 - 41192229
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttt 140  Q
    |||||||||||| |||||||||||||||||||||||    
T  41192264 catatttctatccaactcattaatctctagatcttt 41192229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 37042745 - 37042799
Alignment:
Q  107 tatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttataga 160  Q
    |||||||||| |||||| ||||||||||||||||  ||||||||| |||||||||    
T  37042745 tatttctatccaactcaataatctctagatctttcttaatagtttctcttataga 37042799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 38903796 - 38903865
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||| |||||||||||||||||||| ||| |||||  ||||||||| |||||||| |||| ||||||||    
T  38903796 tcatatctctatcaaactcattaatctttaggtctttcttaatagtttctcttatag-ttttctaggtctt 38903865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 42639099 - 42639145
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    |||||||||||| |||||||||||| ||||||||||  |||||||||    
T  42639099 catatttctatccaactcattaatcgctagatctttcttaatagttt 42639145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 25575027 - 25574982
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagtt 150  Q
    |||||||| ||| |||||||||||||||||||||||  ||||||||    
T  25575027 catatttcgatccaactcattaatctctagatctttcttaatagtt 25574982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 34233116 - 34233234
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccatctgatct 216  Q
    ||||||||||||||||| |||||   |||||||| ||| |||| |||| ||||| || | ||||||||    |||||  |||  | ||||||||| ||||    
T  34233116 aactcattaatctctaggtctttatgaatagtttctctgatagtttttctaggttttcctctgcctct----agtgatctgacgatcctccatctcatct 34233211  T
Q  217 actctccttgctacataatctac 239  Q
    ||||||||| |||||||||||||    
T  34233212 actctccttactacataatctac 34233234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 44047568 - 44047641
Alignment:
Q  243 ctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    |||||||||  ||||||||||||||| || ||| | ||  |||||||  ||||| |||||||||||||||||||    
T  44047568 ctctacatgtccaaaccacctaagcctagattctaccaccttttctactataggtgctaccccaactctctctc 44047641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 44667464 - 44667536
Alignment:
Q  242 tctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    |||||| ||||||| |||||| ||||| ||||  || ||||||| ||| ||||||| |||||||||||||||||    
T  44667464 tctctatatgctcagaccaccaaagccgagttctcaccatatttgcta-gataggcactaccccaactctctct 44667536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 7681989 - 7682106
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||| ||||||||||||| ||||| |||  | ||||||| |||||||| ||||  ||||||| | ||||||||    |||||  |||  |||    
T  7681989 catatttctatctaactcattaatctatagatttttcttgatagtttctcttatagtttttccaggtcttcctctgcctct----agtgatgtgactacc 7682084  T
Q  204 ctccatctgatctactctcctt 225  Q
    |||||||| ||||||| |||||    
T  7682085 ctccatctaatctactttcctt 7682106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 23906512 - 23906588
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||||||||||| ||||||| | |||| |  |  |||||||  ||||| |||||||| ||||||||||    
T  23906512 tctctctacatgctcaaaccatctaagcctattttctacaaacttttctactataggtgctacccccactctctctc 23906588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 31403116 - 31403160
Alignment:
Q  108 atttctatcaaactcattaatctctagatcttttgtaatagtttt 152  Q
    ||||||||| |||| ||||||||||||||||||  ||||||||||    
T  31403116 atttctatccaactaattaatctctagatctttcataatagtttt 31403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 31960031 - 31960107
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  31960031 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 31960107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 35690465 - 35690405
Alignment:
Q  114 atcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||||||||| ||||| || ||| |||||||||| |||||||| |||| ||||||||    
T  35690465 atcaaactcattaacctctaaatttttcgtaatagtttctcttatagtttttctaggtctt 35690405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 37488294 - 37488226
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtct 172  Q
    |||||||  |||||||| |||||| |||||||||||  ||||||||| |||||||| |||| |||||||    
T  37488294 catattttgatcaaacttattaatttctagatctttcttaatagtttctcttatagtttttctaggtct 37488226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 38570968 - 38571040
Alignment:
Q  244 tctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||| ||||||||||||||| ||||||||  || |||| ||  ||||| ||| ||||| |||||||||    
T  38570968 tctacatgcccaaaccacctaagcctagtttccactatcttttgtactataggtgcttccccagctctctctc 38571040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 42293344 - 42293404
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagatttt 164  Q
    ||||| |||||| ||||||||||| |||||||||||  ||||||||| |||||||| ||||    
T  42293344 catatgtctatctaactcattaatttctagatctttcttaatagtttctcttatagttttt 42293404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 43433989 - 43433913
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  43433989 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 43433913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 52569732 - 52569808
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  52569732 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 52569808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 15489666 - 15489834
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    ||||||||| |||||||||||||  |||| |||||||      ||||||||||||| ||||||| ||||||  |||||| | ||| |||||||  |||||    
T  15489666 cctccatctaatctactctccttaatacaaaatctacaaatcttctctctacatgcccaaaccatctaagctgagtttcaaccatcttttctacaatagg 15489765  T
Q  297 cgctaccccaactctctctccaatcctatcttgtctagttttggcacacattcaaagcagtatcctcat 365  Q
      |||||||||||||||||| |||| |||| |||||||| ||  |||||||  || |||| ||||||||    
T  15489766 tactaccccaactctctctctaatcttatcatgtctagtcttaccacacatctaacgcagcatcctcat 15489834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 18351063 - 18351194
Alignment:
Q  185 ctctagtgaattgataaccctccatctgatctactctccttgctacataatctac------tctctctaca-tgctcaaaccacctaagccaagtttcca 277  Q
    ||||||||| ||||| ||||||| | |||||||||||||||  | ||||||||||      |||||||||| ||| ||||||||||||||| |||||| |    
T  18351063 ctctagtgatttgattaccctccttttgatctactctccttattgcataatctacaggtcttctctctacaatgcccaaaccacctaagcctagtttcta 18351162  T
Q  278 tcatattttctaagataggcgctaccccaact 309  Q
     |||||||||||  ||||| ||||||||||||    
T  18351163 ccatattttctactataggtgctaccccaact 18351194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 289
Target Start/End: Complemental strand, 42199476 - 42199302
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataaccctccatctgatct 216  Q
    ||||||||||| |||||||||||   |||||||| ||| |||| |||| |||||||||| || || ||    ||||| ||||  || |||||| ||||||    
T  42199476 aactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctttctctccccct----agtgatttgactactctccatgtgatct 42199381  T
Q  217 actctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    ||||||||| ||||| |||||||      ||||||||||||| ||||||||||||| | |||||||| ||| |||||||    
T  42199380 actctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttcta 42199302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 12576939 - 12577061
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||  |||||||||||||||||||||||  ||||||||| |||| ||| |||| |||||||| | ||||    |||||||||   ||  |||    
T  12576939 catatttctattcaactcattaatctctagatctttcttaatagtttatcttgtagtttttctaggtcttcctctgc----ctctagtgataggactacc 12577034  T
Q  204 ctccatctgatctactctccttgctac 230  Q
    |||||||||||||||||||||| ||||    
T  12577035 ctccatctgatctactctccttactac 12577061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 7359434 - 7359552
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    ||||||||||||||||||||||| ||||| |||||||      ||||||||||||| |||||||||||| || | |||||| |||||||||||  |||||    
T  7359434 cctccatctgatctactctccttactacagaatctacatatcttctctctacatgc-caaaccacctaaacctattttccaccatattttctactatagg 7359532  T
Q  297 cgctaccccaactctctctc 316  Q
     | ||||  |||||||||||    
T  7359533 tgttacctgaactctctctc 7359552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 316
Target Start/End: Complemental strand, 14749510 - 14749296
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataacc 203  Q
    |||||||||||| ||||| |||||||||||||| ||  | ||||||| |||||||| |||| |||||||| | ||||    || |||||| ||||   ||    
T  14749510 catatttctatccaactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtcttcctctgc----ctttagtgatttgactccc 14749415  T
Q  204 ctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggc 297  Q
    |||||||||||| ||||||||| | ||| |||| ||      ||||||||||||  ||||||| ||||| | |||||| | ||  |||||||  |||||     
T  14749414 ctccatctgatcgactctccttacaacagaatccacaggtcttctctctacatgtccaaaccatctaagtctagtttctaccaatttttctactataggt 14749315  T
Q  298 gctaccccaactctctctc 316  Q
    ||||| |||||||||||||    
T  14749314 gctacaccaactctctctc 14749296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 219690 - 219750
Alignment:
Q  260 acctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctccaat 320  Q
    |||||||||||||||||| ||  ||||| | |||||| |||||||||||||||||||||||    
T  219690 acctaagccaagtttccaccaccttttcaacgataggtgctaccccaactctctctccaat 219750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 33667281 - 33667209
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctc 312  Q
    ||||||||||||| ||||||||||||| | |||||| | ||| |||||||  ||||| |||||||||||||||    
T  33667281 tctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctc 33667209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 31636137 - 31636212
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctct 315  Q
    ||||||||||||| ||||||||||||| | |||||| | ||| |||||||  ||||| |||||||||||| |||||    
T  31636137 tctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactttctct 31636212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 27947 - 27887
Alignment:
Q  251 gctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactct 311  Q
    |||||||||||||||||| | |||||||||| |||||||  ||||| ||||||| ||||||    
T  27947 gctcaaaccacctaagcctattttccatcatcttttctactataggtgctaccctaactct 27887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 28005731 - 28005691
Alignment:
Q  112 ctatcaaactcattaatctctagatcttttgtaatagtttt 152  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  28005731 ctatcaaactcattaatctctagatctttcttaatagtttt 28005691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 43558044 - 43558120
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    |||||||| |||| ||||||||||||||  |||||||| ||| |||||||  ||||  ||||||| |||||||||||    
T  43558044 tctctctatatgcccaaaccacctaagcttagtttccaccatcttttctattatagatgctaccctaactctctctc 43558120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 42199596 - 42199525
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttc 175  Q
    |||||||||||| ||||||||||| |||||||||||   |||||||| ||| |||| |||| ||||||||||    
T  42199596 catatttctatccaactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctttc 42199525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 14667814 - 14667752
Alignment:
Q  254 caaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| | | |||||| ||| |||||||  ||||| |||||||||||||||||||    
T  14667814 caaaccacctaagtctattttccaccatcttttctactataggtgctaccccaactctctctc 14667752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 39322146 - 39322192
Alignment:
Q  106 atatttctatcaaactcattaatctctagatcttttgtaatagtttt 152  Q
    ||||||||||| ||||||||||||| |||||||||  ||||||||||    
T  39322146 atatttctatccaactcattaatctttagatctttcttaatagtttt 39322192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 27553896 - 27553847
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    ||||||||||||||||||||||||||||  | |||  |||||||||||||    
T  27553896 tctctctacatgctcaaaccacctaagcttattttatatcatattttcta 27553847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 38684683 - 38684614
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||||||| |||| ||||||||||||||||||  ||| ||||| |||| ||| |||| ||||||||    
T  38684683 catatttctatccaactaattaatctctagatctttcttaaaagtttctcttgtagtttttctaggtctt 38684614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 1287796 - 1287872
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  1287796 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 1287872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 4496449 - 4496373
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  4496449 tctctctacatgcccaaaccatctaagcctattttctaccagcttttctactataggtgctacccccactctctctc 4496373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 18698862 - 18698818
Alignment:
Q  242 tctctacatgctcaaaccacctaagccaagtttccatcatatttt 286  Q
    |||||||| ||||||| |||||||||| |||||||||||| ||||    
T  18698862 tctctacacgctcaaatcacctaagcctagtttccatcatctttt 18698818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 34273092 - 34273016
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  34273092 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctattataggtgctacccccactctctctc 34273016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 9695696 - 9695629
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaa 307  Q
    ||||||||||||| ||||||||||||||| |||||||| ||| |||||||  ||||| ||||||||||    
T  9695696 tctctctacatgcccaaaccacctaagccgagtttccaccatcttttctactataggtgctaccccaa 9695629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 38178338 - 38178470
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctctctctagtgaattgataac 202  Q
    |||||| |||||| ||||||||||| ||||| |||||  ||||||||| |||||||| |||| |||||||| | || |    |||||| || ||||  |     
T  38178338 tcatatctctatccaactcattaatgtctaggtctttgttaatagtttctcttatagtttttctaggtcttcctctac----ctctagcgatttgactat 38178433  T
Q  203 cctccatctgatctactctccttgctacataatctac 239  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  38178434 cctccatctgatctactctccttactacaaaatctac 38178470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 6483319 - 6483246
Alignment:
Q  243 ctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    |||||||||| |||||||||||||||||||||||| | | |||||||  |||   |||||||||||||||||||    
T  6483319 ctctacatgcccaaaccacctaagccaagtttccaccctcttttctactataccagctaccccaactctctctc 6483246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 236
Target Start/End: Original strand, 10079985 - 10080114
Alignment:
Q  104 tcatatttctatcaaactcattaatctctagatcttttgtaatag-ttttcttatagattttgtaggtctttccctgcctctctctagtgaattgataac 202  Q
    ||||||||||||| |||||||||||||||||||||||  ||| || ||||||||||| || | |||||||| | || |    ||||||||| ||||   |    
T  10079985 tcatatttctatccaactcattaatctctagatctttcttaacagtttttcttatagtttctctaggtcttcctctac----ctctagtgatttgactcc 10080080  T
Q  203 cctccatctgatctactctccttgctacataatc 236  Q
    ||| ||| ||||||||||||||| ||||| ||||    
T  10080081 ccttcatttgatctactctccttactacaaaatc 10080114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 35643685 - 35643765
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctct 184  Q
    |||||||| ||| |||||||||||||||||||||||  ||||| ||| |||||||| |||| |||||||| | ||||||||    
T  35643685 catatttcgatccaactcattaatctctagatctttcttaataatttctcttatagtttttctaggtcttcctctgcctct 35643765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 29700339 - 29700268
Alignment:
Q  242 tctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctct 313  Q
    |||||| |||| ||||||||||||||||| |||||  ||| |||||||  ||||| ||||||||||||||||    
T  29700339 tctctatatgcccaaaccacctaagccaactttcctccatcttttctactataggtgctaccccaactctct 29700268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 10109016 - 10108939
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcc 181  Q
    ||||| |||||||||||| |||||||||||||||||  || |||||| |||||| | |||| |||||||||| |||||    
T  10109016 catatctctatcaaactcgttaatctctagatctttcttattagtttctcttatggtttttctaggtctttctctgcc 10108939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 18474177 - 18474250
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctct 313  Q
    ||||||||||||||||||||| ||||||| |||||||| |||  ||||||  ||||| ||||| | ||||||||    
T  18474177 tctctctacatgctcaaaccaactaagcctagtttccaccatcatttctactataggtgctactctaactctct 18474250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 38409196 - 38409229
Alignment:
Q  203 cctccatctgatctactctccttgctacataatc 236  Q
    ||||||||||||||||||||||||||||||||||    
T  38409196 cctccatctgatctactctccttgctacataatc 38409229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 39388989 - 39388940
Alignment:
Q  102 tttcatatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    |||| |||||||||| |||||||||||||||||||||||  |||||||||    
T  39388989 tttcttatttctatccaactcattaatctctagatctttcctaatagttt 39388940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 45331734 - 45331775
Alignment:
Q  195 ttgataaccctccatctgatctactctccttgctacataatc 236  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  45331734 ttgatgaccctccatctgatctactctccttactacataatc 45331775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 2796622 - 2796546
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  |||||||||||||| ||||||||||    
T  2796622 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggcgctacccccactctctctc 2796546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 13589551 - 13589475
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    |||||| ||||| ||||||||||||| |  | |||| | |||||||||||  |||||||||||| ||||||||||||    
T  13589551 tctctcaacatgttcaaaccacctaatcatattttctaccatattttctattataggcgctacctcaactctctctc 13589475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 79230 - 79175
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatag 159  Q
    |||||||||||| | |||||||||||||||||||||  ||||||||| ||||||||    
T  79230 catatttctatccagctcattaatctctagatctttcttaatagtttctcttatag 79175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 38483048 - 38483083
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttt 140  Q
    |||||||||||| |||||||||||||||||||||||    
T  38483048 catatttctatccaactcattaatctctagatcttt 38483083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 7531817 - 7531851
Alignment:
Q  202 ccctccatctgatctactctccttgctacataatc 236  Q
    |||||||||||||||||||||||| ||||||||||    
T  7531817 ccctccatctgatctactctccttactacataatc 7531851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 1549594 - 1549643
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttcta 289  Q
    ||||||||||||||||||| ||||||||| |||||||  ||| |||||||    
T  1549594 tctctctacatgctcaaactacctaagcctagtttcccccatcttttcta 1549643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 2776446 - 2776511
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctacccc 305  Q
    |||||| |||||| ||||||||||||||| |||||| | |||  |||||| |||||| ||||||||    
T  2776446 tctctcaacatgcccaaaccacctaagccgagtttctaccatcatttctacgataggtgctacccc 2776511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 4011278 - 4011217
Alignment:
Q  113 tatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||| ||||||||||||| |||||||||  ||||||||| |||||||| |||| ||||||||    
T  4011278 tatccaactcattaatctttagatctttcttaatagtttctcttatagtttttctaggtctt 4011217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 7046435 - 7046335
Alignment:
Q  210 ctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctacc 303  Q
    |||||||||||||||| ||||| || ||||      ||||||||||||| ||||||| ||||||| || ||||| ||| ||||||| ||| || ||||||    
T  7046435 ctgatctactctccttactacagaagctacgtgttttctctctacatgcccaaaccagctaagccgaggttccaccatcttttctacgattggtgctacc 7046336  T
Q  304 c 304  Q
    |    
T  7046335 c 7046335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 13171866 - 13171947
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctccaatc 321  Q
    ||||| || |||| ||||||||||||||  | |||||| ||| |||||||  ||||| ||| ||||||||||||||| ||||    
T  13171866 tctctttatatgcccaaaccacctaagcatattttccaccatcttttctactataggtgcttccccaactctctctctaatc 13171947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 41444547 - 41444612
Alignment:
Q  244 tctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaact 309  Q
    ||||||||  |||||||||||| || |||||||| ||| |||||||  ||||| ||||||||||||    
T  41444547 tctacatgtccaaaccacctaaacctagtttccaccatcttttctactataggtgctaccccaact 41444612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 12611596 - 12611524
Alignment:
Q  244 tctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||| | ||||||||||||||| |||||||| ||| |||||||   |||| ||||| ||| |||||||||    
T  12611596 tctacatacgcaaaccacctaagcctagtttccaccatcttttctactttaggtgctacaccagctctctctc 12611524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 23023308 - 23023232
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    |||||||||||  |||||| ||||||||| |||||||  ||| |||||||  ||| | ||||||| |||||||||||    
T  23023308 tctctctacataatcaaactacctaagcctagtttcccccatcttttctacaataagtgctacccgaactctctctc 23023232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 29520758 - 29520722
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac 239  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  29520758 cctccatctgatctactctccttactacaaaatctac 29520722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 36565458 - 36565534
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  36565458 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 36565534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 42493537 - 42493597
Alignment:
Q  254 caaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctc 314  Q
    ||||||||||||||| ||||||||  || |||||||  ||||| | |||||||||||||||    
T  42493537 caaaccacctaagcctagtttccacaatcttttctactataggtgttaccccaactctctc 42493597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 45512712 - 45512788
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||| || |||| ||||||| ||||||  | |||||||||| |||||||  ||||| ||||||||||||| |||||    
T  45512712 tctctttatatgcccaaaccatctaagcttattttccatcatcttttctactataggtgctaccccaactccctctc 45512788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 44085 - 44158
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctct 313  Q
    ||||||||||||| ||||||||||||||| | |||||  ||| |||||||  ||||| ||||||||||||||||    
T  44085 tctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctaccccaactctct 44158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 31533 - 31457
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||||| ||||||| ||||||| | |||| | ||  |||||||  ||||| |||||||| ||||||||||    
T  31533 tctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctc 31457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 178512 - 178568
Alignment:
Q  118 aactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctt 173  Q
    |||||||||||||||| ||||||  ||||||||| |||||||| |||| ||||||||    
T  178512 aactcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctt 178568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 2380 - 2424
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagt 149  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  2380 catatttctatcaaactcattaatctctagatctttcttaatagt 2424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 32913418 - 32913513
Alignment:
Q  185 ctctagtgaattgataaccctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagttt 274  Q
    ||||||||| ||||  ||||||||||| || ||||||||||||||||||||||||      | ||||||||||  ||||||||||||||| |||||    
T  32913418 ctctagtgatttgactaccctccatctaatatactctccttgctacataatctacaactcttttctctacatggccaaaccacctaagccgagttt 32913513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 33084123 - 33084047
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctctctc 316  Q
    ||||||||||| | ||||||||||||| | |||||| | ||| |||||||  ||||| |||||||||||||||||||    
T  33084123 tctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctctc 33084047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 35199701 - 35199747
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt 151  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||    
T  35199701 catatttctatctaactcattaatctctagatctttcctaatagttt 35199747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 34584 - 34664
Alignment:
Q  105 catatttctatcaaactcattaatctctagatcttttgtaatagttt-tcttatagattttgtaggtctttccctgcctct 184  Q
    |||||||| ||| ||||||||||||| |||||||||  |||| |||| |||||||| |||| |||||||| | ||||||||    
T  34584 catatttcaatccaactcattaatctttagatctttcttaatggtttctcttatagtttttctaggtcttcctctgcctct 34664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 9593880 - 9593999
Alignment:
Q  203 cctccatctgatctactctccttgctacataatctac------tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagatagg 296  Q
    ||||||||||||||||||| ||| |||||  ||||||      ||||||||||||| ||||||||||||||| | |||| | ||| |||||||  |  ||    
T  9593880 cctccatctgatctactcttcttactacagcatctacatgtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactaatgg 9593979  T
Q  297 cgctaccccaactctctctc 316  Q
     ||||||||||||| |||||    
T  9593980 tgctaccccaactccctctc 9593999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 9749441 - 9749509
Alignment:
Q  240 tctctctacatgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaac 308  Q
    ||||||||||| |  ||||||||||| ||||||||||| | | ||||||| |||||||| |||||||||    
T  9749441 tctctctacatccctaaaccacctaaaccaagtttccaccttcttttctacgataggcggtaccccaac 9749509  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 4948480 - 4948513
Alignment:
Q  205 tccatctgatctactctccttgctacataatcta 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  4948480 tccatctgatctactctccttactacataatcta 4948513  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 4955451 - 4955484
Alignment:
Q  205 tccatctgatctactctccttgctacataatcta 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  4955451 tccatctgatctactctccttactacataatcta 4955484  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 21870299 - 21870363
Alignment:
Q  249 atgctcaaaccacctaagccaagtttccatcatattttctaagataggcgctaccccaactctct 313  Q
    |||| ||||||||||||||| |||||| | ||| |||||||  | ||| ||||||||||||||||    
T  21870299 atgcccaaaccacctaagccgagtttctaccatcttttctactacaggtgctaccccaactctct 21870363  T

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