View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_high_26 (Length: 347)
Name: NF11500_high_26
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 43603417 - 43603122
Alignment:
| Q |
9 |
agcagagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaa |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603417 |
agcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaa |
43603318 |
T |
|
| Q |
109 |
gtaattctgaaaagcaaccaagaaggattacagaaaaaattagtcctaagattc--tgtcaaaatagcatttgtttagaaatcacatagagattaaagaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603317 |
gtaattctgaaaagcaaccaagaaggattacagaaaaaattagtcctaagattctttgtcaaaatagcatttgtttagaaatcacatagagattaaagaa |
43603218 |
T |
|
| Q |
207 |
taatgataatgtactacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccata |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603217 |
taatgataatgtactacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccata |
43603122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 43609826 - 43609531
Alignment:
| Q |
9 |
agcagagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaa |
108 |
Q |
| |
|
|||| |||||||||| |||| ||||| ||||||||||| ||| ||| || | ||||||||| ||| ||| |||| ||||||||||||||||| |||| |
|
|
| T |
43609826 |
agcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagagcaacaccatgcacattcagagttaaa |
43609727 |
T |
|
| Q |
109 |
gtaattctgaaaa-gcaaccaagaaggattacagaaaaaattagtcctaagattctgt--caaaatagca----tttgtttagaaatcacatagagatta |
201 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||| ||| |||||||||||||||||| | ||||||| | || ||| | |||| ||| ||||||| |
|
|
| T |
43609726 |
gtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctatatcaaaataataaaatttggttgaaaaataaca--gagatta |
43609629 |
T |
|
| Q |
202 |
aagaataatgataatgtactacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccat |
301 |
Q |
| |
|
| ||||||| |||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
43609628 |
aggaataat---aatgtactaccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatgttactggcacggcttgtttcctggaccat |
43609532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 43616371 - 43616244
Alignment:
| Q |
9 |
agcagagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaa |
108 |
Q |
| |
|
|||| |||||||||| |||| ||||| || |||||||| |||||||||||| |||||| |||||| |||| |||||||||| |||||||| || |||| |
|
|
| T |
43616371 |
agcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaa |
43616272 |
T |
|
| Q |
109 |
gtaattctgaaaagcaaccaagaaggat |
136 |
Q |
| |
|
||||||||||||| |||| ||| ||||| |
|
|
| T |
43616271 |
gtaattctgaaaaacaacaaagtaggat |
43616244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 43614923 - 43614842
Alignment:
| Q |
221 |
tacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccata |
302 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||| |
|
|
| T |
43614923 |
taccccaataatgaaagcataaaaatcttgaagatggttataaatgagaatattgctggcacggcttgtttcctggaccata |
43614842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University