View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_high_29 (Length: 340)
Name: NF11500_high_29
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_29 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 29612519 - 29612839
Alignment:
| Q |
20 |
tatctttagcaccatattgtatgtaaagcagctctcaccctccacaaaatatgctcaactaaaaacttacataagctttgcagttttgctgatcatctca |
119 |
Q |
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|||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29612519 |
tatctttaccaccatattgtttgtaaagcagttctcaccatccacaaaatatgctcaactaaaaacttacataagctttgcagttttgatgatcatctca |
29612618 |
T |
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| Q |
120 |
gtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagtttcgaatgctgcatttgctttgatgtcgttaagcttgtcaa |
219 |
Q |
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| T |
29612619 |
gtgtactcattctattacgacaaggctgtgaacggtaaacctgaaatattgagcctagtttcgaatgctgcatttgctttgatgtctttaagcttgtcaa |
29612718 |
T |
|
| Q |
220 |
aactgatcaagtttggatttgaaataggcatatttgcttatttcctaggttgcctagccgttcaactgtggaccatcaattggatgctgatattggttgc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
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| T |
29612719 |
aactgatcaagtttggatttgaaataggcatatttgcttatttcctaggttgccttgtggttcaactgtggaccatcaattggatgctgattttggttgc |
29612818 |
T |
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| Q |
320 |
tataatctctgcttctccact |
340 |
Q |
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|||||||| || || |||||| |
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| T |
29612819 |
tataatctttggttgtccact |
29612839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 100 - 327
Target Start/End: Original strand, 29524810 - 29525037
Alignment:
| Q |
100 |
cagttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagtttcgaatgctgcatttgcttt |
199 |
Q |
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| T |
29524810 |
cagttttgatgatcatctcagtgtactcattctattacgacaaggctgtgaacgggaaacctgaaatattgagtatagtttcgaatgctgcatttgcttt |
29524909 |
T |
|
| Q |
200 |
gatgtcgttaagcttgtcaaaactgatcaagtttggatttgaaataggcatatttgcttatttcctaggttgcctagccgttcaactgtggaccatcaat |
299 |
Q |
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|| || ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29524910 |
gacatccttaagcttgtccaaactgatcaggtttggatttgaaataggcatattttcttatttcctaggttgcctagcagttcaactgtggaccatcaat |
29525009 |
T |
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| Q |
300 |
tggatgctgatattggttgctataatct |
327 |
Q |
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| T |
29525010 |
tggatgctgatttcggttgctataatct |
29525037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 305
Target Start/End: Complemental strand, 29475191 - 29474988
Alignment:
| Q |
102 |
gttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagtttcgaatgctgcatttgctttga |
201 |
Q |
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|||||| ||||||||||||||||| |||| | || ||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29475191 |
gttttgatgatcatctcagtgtacgcatttttctatgaccgagctgtgaatggaaaacctgaaatattgagtatagtttcaaatgctgcatttgctttgg |
29475092 |
T |
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| Q |
202 |
tgtcgttaagcttgtcaaaactgatcaagtttggatttgaaataggcatatttgcttatttcctaggttgcctagccgttcaactgtggaccatcaattg |
301 |
Q |
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| || ||||| || |||||||| || ||||| ||||| || || |||| |||||||| |||||||| | | |||||||||| |||||||| || |
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| T |
29475091 |
tttcattaagtttacacaaactgattaactttgggtttgagattggtgtattctcttatttcttaggttgctttacagttcaactgttaaccatcaactg |
29474992 |
T |
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| Q |
302 |
gatg |
305 |
Q |
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|||| |
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| T |
29474991 |
gatg |
29474988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 68 - 215
Target Start/End: Complemental strand, 29526892 - 29526745
Alignment:
| Q |
68 |
atatgctcaactaaaaacttacataagctttgcagttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaata |
167 |
Q |
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||||| |||||| ||||||| || | ||||||||||||| |||||||||||||||| ||||||| ||||||| ||| ||||||| ||||| || ||| |
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| T |
29526892 |
atatgttcaactcaaaacttgcacactctttgcagttttgatgatcatctcagtgtattcattcttctacgacagagctttgaatggaaaacccgacata |
29526793 |
T |
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| Q |
168 |
ttgagtatagtttcgaatgctgcatttgctttgatgtcgttaagcttg |
215 |
Q |
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||||| ||||||| || ||||||||| || || |||| ||||||||| |
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| T |
29526792 |
ctgagtgtagtttcaaacgctgcattttctatggtgtccttaagcttg |
29526745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 28183733 - 28183848
Alignment:
| Q |
84 |
acttacataagctttgcagttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagtttcga |
183 |
Q |
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|||| ||||| ||||| |||||| |||| ||||||||||||||||||| || ||| |||| ||||||| |||||| | ||| ||||| || |||| | |
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| T |
28183733 |
acttgcataacctttgtggttttgatgattatctcagtgtactcattcttctatgacgaagctgtgaatggaaaacctaacatactgagtgtaatttcaa |
28183832 |
T |
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| Q |
184 |
atgctgcatttgcttt |
199 |
Q |
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|||||||||||||||| |
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| T |
28183833 |
atgctgcatttgcttt |
28183848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 29528887 - 29528751
Alignment:
| Q |
79 |
taaaaacttacataagctttgcagttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagt |
178 |
Q |
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||||||||| || || |||||| |||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| | ||| | ||| |||| |
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| T |
29528887 |
taaaaacttgcacaatctttgcggttttggtgatcatctaagtgtactcattcgtctacgacagagctgtcaatggaaaacctaacatacttagtgtagt |
29528788 |
T |
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| Q |
179 |
ttcgaatgctgcatttgctttgatgtcgttaagcttg |
215 |
Q |
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||| || ||| | ||||||||| |||| ||||||||| |
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| T |
29528787 |
ttcaaacgcttcgtttgctttggtgtcattaagcttg |
29528751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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