View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_high_41 (Length: 242)
Name: NF11500_high_41
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 47686224 - 47686003
Alignment:
| Q |
14 |
cactcttttcagcaaacttcttacgcgaatcaccatcaatggccacacttttaagttcatccaacaaatcaataagtgtctgattaaatgcatcattccc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47686224 |
cactcttttcagcaaacttcttacgcgaatcaccatcaatggccacacttttaagttcatccaacaaatcaataagtgtctgattaaatgcatcattccc |
47686125 |
T |
|
| Q |
114 |
tactgttttgccttccatatcgaaatacttacttgttttagtttccatgacaccaaaaattgaatcatttgaataacgtaagatacacaagtcatagtaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47686124 |
tactgttttgccttccatatcgaaatacttacttgttttagtttccatgataccaaaaattgaatcatttgaataacgtaagatacacaagtcatagtaa |
47686025 |
T |
|
| Q |
214 |
ccaattgcttctttttcttctc |
235 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
47686024 |
ccaattgcttctttttgttctc |
47686003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 47674110 - 47673895
Alignment:
| Q |
14 |
cactcttttcagcaaacttcttacgcgaatcaccatcaatggccacacttttaagttcatccaacaaatcaataagtgtctgattaaatgcatcattccc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||| | | |
|
|
| T |
47674110 |
cactcttttcagcaaacttcttacgcgaatcaccatcagcggccacggttttaagttcatccaacaaatcaagaagtgtttgattaaatgcatcatccgc |
47674011 |
T |
|
| Q |
114 |
tactgttttgccttccatatcgaaatacttacttgttttagtttccatgacaccaaaaattgaatcatttgaataacgtaagatacacaagtcatagtaa |
213 |
Q |
| |
|
||| || ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
47674010 |
ccttgtattagctttgatattgaaataattacttgttttagtttccatgacaccaaaaattgaatcatttgaataacgtaaactacacaagtcgaagtaa |
47673911 |
T |
|
| Q |
214 |
ccaattgcttcttttt |
229 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47673910 |
ccaattgcttcttttt |
47673895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University