View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_high_7 (Length: 547)
Name: NF11500_high_7
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 145 - 537
Target Start/End: Original strand, 28497228 - 28497621
Alignment:
| Q |
145 |
taatgcaagaggttcaaacttgtgatgtatgctttcttgtttgtttgattttcattttctgcgaagatagataaaaccaaaagcatagatagctatataa |
244 |
Q |
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| T |
28497228 |
taatgcaagaggttcaaacttgtgatgtatgctttcttgtttgtttgattttcattttctgcgaagatagataaaaccaaaagcatagatagctatataa |
28497327 |
T |
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| Q |
245 |
ctataaccatatactataacattattactattctcnnnnnnn-ctctgtcttggctctctcttgctgttttggtctttggagtagtcattttctaatctt |
343 |
Q |
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| T |
28497328 |
ctataaccatatactataacattattactattctcttttttttctctgtcttggctctctcttgctgttttggtctttggagtagtcattttctaatctt |
28497427 |
T |
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| Q |
344 |
attattttgcttgtatcttcaaagaaggtgagccatataatatttaaatggacccaccataagcacatttcacatttcacacacgcacatacattgatat |
443 |
Q |
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| T |
28497428 |
attattttgcttgtatcttcaaagaaggtgagccatataatatttaaatggacccaccataagcacatttcacatttcacacacgcacatacattgatat |
28497527 |
T |
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| Q |
444 |
tctctctctttcatagtcatacacgacatacaaaatcagacacaagtcacacgcacaatgttgtggaatagtgtgtcttgtgtttgtgcctttg |
537 |
Q |
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| T |
28497528 |
tctctctctttcatagtcatacacgacatacaaaatcagacacaagtcacacgcacaatgttgtggaatagtgtgtcttgtgtttgtgcctttg |
28497621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 28497101 - 28497147
Alignment:
| Q |
18 |
ctttaaagagagagttgttggctacttggctgagtgtatcgttcagc |
64 |
Q |
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| T |
28497101 |
ctttaaagagagagttgttggctacttggctgagtgtatcgttcagc |
28497147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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