View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11500_high_8 (Length: 518)

Name: NF11500_high_8
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11500_high_8
NF11500_high_8
[»] scaffold0059 (4 HSPs)
scaffold0059 (317-406)||(228-315)
scaffold0059 (317-403)||(6271-6357)
scaffold0059 (24-75)||(170-221)
scaffold0059 (12-75)||(6201-6264)
[»] scaffold0013 (2 HSPs)
scaffold0013 (317-403)||(239043-239129)
scaffold0013 (12-75)||(239136-239199)
[»] chr6 (1 HSPs)
chr6 (83-133)||(5180249-5180299)
[»] chr3 (3 HSPs)
chr3 (412-501)||(2508115-2508203)
chr3 (450-502)||(28577863-28577915)
chr3 (24-80)||(2508306-2508362)
[»] scaffold0212 (1 HSPs)
scaffold0212 (278-318)||(15765-15805)
[»] chr7 (2 HSPs)
chr7 (14-70)||(31848917-31848973)
chr7 (278-315)||(44194014-44194051)
[»] chr5 (1 HSPs)
chr5 (458-495)||(13391782-13391819)
[»] scaffold0082 (2 HSPs)
scaffold0082 (171-203)||(29376-29408)
scaffold0082 (134-170)||(55109-55145)
[»] chr2 (1 HSPs)
chr2 (282-318)||(36499491-36499527)
[»] chr8 (1 HSPs)
chr8 (98-133)||(30066548-30066583)
[»] scaffold0024 (1 HSPs)
scaffold0024 (134-170)||(55965-56001)
[»] chr4 (1 HSPs)
chr4 (171-203)||(5085724-5085756)


Alignment Details
Target: scaffold0059 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 406
Target Start/End: Original strand, 228 - 315
Alignment:
Q  317 aattggtgttcctccctctttctctatgtttttcgctctagagtaagtgattgatcccagatgaaatgtcacaaaagctatttataccat 406  Q
    ||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||  ||||||| ||||||||    
T  228 aattggtgttccttcctatttctctctgtttttcactctagagtaagtgattgatcccagctgaaatgtaac--aagctatgtataccat 315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 6271 - 6357
Alignment:
Q  317 aattggtgttcctccctctttctctatgtttttcgctctagagtaagtgattgatcccagatgaaatgtcacaaaagctatttatac 403  Q
    ||||| ||||||| ||||||||||| |  |||| |||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  6271 aattgatgttccttcctctttctctctactttttgctctagagtaagtgattgatcccagctgaaatgcaacaaaagctatttatac 6357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 170 - 221
Alignment:
Q  24 tttgccatcaagccttgatttctcaagaaatgctgttaatccaccttcaatc 75  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  170 tttgccatcaatccttgatttctcaagaaatgttgttaatccaccttcaatc 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 6201 - 6264
Alignment:
Q  12 gagatgaattcatttgccatcaagccttgatttctcaagaaatgctgttaatccaccttcaatc 75  Q
    ||||||||||  ||||| ||| | ||||||||| |||||||||| |||||||||||||||||||    
T  6201 gagatgaattggtttgctatccatccttgatttatcaagaaatgttgttaatccaccttcaatc 6264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 403
Target Start/End: Complemental strand, 239129 - 239043
Alignment:
Q  317 aattggtgttcctccctctttctctatgtttttcgctctagagtaagtgattgatcccagatgaaatgtcacaaaagctatttatac 403  Q
    ||||| ||||||| ||||||||||| |  |||| |||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  239129 aattgatgttccttcctctttctctctactttttgctctagagtaagtgattgatcccagctgaaatgcaacaaaagctatttatac 239043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 239199 - 239136
Alignment:
Q  12 gagatgaattcatttgccatcaagccttgatttctcaagaaatgctgttaatccaccttcaatc 75  Q
    ||||||||||  ||||| ||| | ||||||||| |||||||||| |||||||||||||||||||    
T  239199 gagatgaattggtttgctatccatccttgatttatcaagaaatgttgttaatccaccttcaatc 239136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 5180299 - 5180249
Alignment:
Q  83 aaccagcacctctgggatcaaaatacaggcccagcgaactacctttcattc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5180299 aaccagcacctctgggatcaaaatacaggcccagcgaactacctttcattc 5180249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 412 - 501
Target Start/End: Complemental strand, 2508203 - 2508115
Alignment:
Q  412 ctgctcgcttaaccacgcccaggctcgcttagcgaccaaagctttcttcaccagtgggattctgccacatcagcaaagtggccctcaaac 501  Q
    ||||| ||||| |||||||||||||||||| |||| | |||||||||| ||||||||| || |||||| |||||||||||||||| ||||    
T  2508203 ctgcttgcttagccacgcccaggctcgcttggcgagcgaagctttctttaccagtggg-ttgtgccacgtcagcaaagtggccctaaaac 2508115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 502
Target Start/End: Original strand, 28577863 - 28577915
Alignment:
Q  450 aagctttcttcaccagtgggattctgccacatcagcaaagtggccctcaaacc 502  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  28577863 aagctttcttcaccaatgggtttctgccacatcagcaaagtggccctcaaacc 28577915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 2508362 - 2508306
Alignment:
Q  24 tttgccatcaagccttgatttctcaagaaatgctgttaatccaccttcaatctttac 80  Q
    ||||||||||||||||||||| |||| ||| | |||||||||||||||| |||||||    
T  2508362 tttgccatcaagccttgatttgtcaaaaaaagttgttaatccaccttcagtctttac 2508306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0212 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0212
Description:

Target: scaffold0212; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 15805 - 15765
Alignment:
Q  278 aacgctcaactgtggcacaattagctcaaattctttcagaa 318  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  15805 aacgctcaactgtggcacaattagttcaaattctttcagaa 15765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 31848973 - 31848917
Alignment:
Q  14 gatgaattcatttgccatcaagccttgatttctcaagaaatgctgttaatccacctt 70  Q
    |||||||| ||||||||||||||| |||||||| |||||||| | ||||||||||||    
T  31848973 gatgaattaatttgccatcaagccatgatttcttaagaaatgtttttaatccacctt 31848917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 44194051 - 44194014
Alignment:
Q  278 aacgctcaactgtggcacaattagctcaaattctttca 315  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  44194051 aacgctcaactgtggcacaattagttcaaatcctttca 44194014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 458 - 495
Target Start/End: Original strand, 13391782 - 13391819
Alignment:
Q  458 ttcaccagtgggattctgccacatcagcaaagtggccc 495  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13391782 ttcaccagtgggtttctgccacatcagcaaagtggccc 13391819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0082 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 29376 - 29408
Alignment:
Q  171 gatcgagacgggaacagaactgaaagcaagtag 203  Q
    |||||||||||||||||||||||||||||||||    
T  29376 gatcgagacgggaacagaactgaaagcaagtag 29408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0082; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 55145 - 55109
Alignment:
Q  134 aatctttctgccgtgtgctctttttactattctttcg 170  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  55145 aatctttctgcggtgtgctctgtttactattctttcg 55109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 36499491 - 36499527
Alignment:
Q  282 ctcaactgtggcacaattagctcaaattctttcagaa 318  Q
    |||||||||||||||||||| ||||||||||||||||    
T  36499491 ctcaactgtggcacaattagttcaaattctttcagaa 36499527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 30066548 - 30066583
Alignment:
Q  98 gatcaaaatacaggcccagcgaactacctttcattc 133  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30066548 gatcaaaatacaggcccagtgaactacctttcattc 30066583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 55965 - 56001
Alignment:
Q  134 aatctttctgccgtgtgctctttttactattctttcg 170  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  55965 aatctttctgcggtgtgctctgtttactattctttcg 56001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 5085756 - 5085724
Alignment:
Q  171 gatcgagacgggaacagaactgaaagcaagtag 203  Q
    |||||| ||||||||||||||||||||||||||    
T  5085756 gatcgaaacgggaacagaactgaaagcaagtag 5085724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University