View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11500_low_1 (Length: 899)

Name: NF11500_low_1
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11500_low_1
NF11500_low_1
[»] chr5 (3 HSPs)
chr5 (402-868)||(15376005-15376474)
chr5 (18-401)||(15376508-15376886)
chr5 (810-857)||(18757384-18757431)
[»] chr4 (2 HSPs)
chr4 (801-864)||(10581574-10581637)
chr4 (228-278)||(45122313-45122363)
[»] chr2 (1 HSPs)
chr2 (799-857)||(36461454-36461512)
[»] chr8 (1 HSPs)
chr8 (799-864)||(24209531-24209596)
[»] chr1 (2 HSPs)
chr1 (228-323)||(6219603-6219698)
chr1 (289-334)||(7790319-7790364)
[»] chr3 (3 HSPs)
chr3 (289-359)||(33429089-33429159)
chr3 (289-358)||(1163424-1163493)
chr3 (619-662)||(35052456-35052499)
[»] scaffold0032 (1 HSPs)
scaffold0032 (809-857)||(25196-25244)
[»] chr7 (4 HSPs)
chr7 (289-364)||(12427929-12428004)
chr7 (617-660)||(23940521-23940564)
chr7 (617-650)||(26979703-26979736)
chr7 (289-338)||(42709956-42710005)
[»] chr6 (1 HSPs)
chr6 (311-358)||(32520093-32520140)
[»] scaffold0340 (1 HSPs)
scaffold0340 (310-396)||(10937-11023)


Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 402 - 868
Target Start/End: Complemental strand, 15376474 - 15376005
Alignment:
Q  402 tagtttgaaattggcttataaagacaggggtcaatttggtggtttacttctaaaaataggttttgtctacgaatgatattgcattgtatacaagtgtttt 501  Q
    |||||||| |||| ||||||||||  || |||||||||||||||||||  | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  15376474 tagtttgagattgacttataaagatcggagtcaatttggtggtttactattgaaaataggttttgtctacaaatgatattgcattgtatacaagtgtttt 15376375  T
Q  502 t-ctactattggatnnnnnnntcacatcatgtttcatttaannnnnnnnn--ctttctaagaaacatgtttcattcaacttaacagttagatttattgac 598  Q
    | ||||||||||||       ||||||||||||||||||||           |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  15376374 ttctactattggataaaaaaatcacatcatgtttcatttaatttttttctttctttctaagaaacaggtttcattcaacttaacggttagatttattgac 15376275  T
Q  599 aaattgatgcaaattacgttgtgcatgatgcaagatttatctcacttgtgcattatagaattggacaattaatattacctttgttaaaattaacaataat 698  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15376274 aaattgaaggaaattacgttgtgcatgatgcaagatttatctcacttgtgtattatagaattggacaattaacattacctttgttaaaattaacaataat 15376175  T
Q  699 aatcatgtaagacaactcaattggtagctccaatgaaaataatatgtagagaccgatgttatcataattgtttaacgtgatcaagtcaatatcatgttaa 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376174 aatcatgtaagacaactcaattggtagctccaatgaaaataatatgtagagaccgatgttatcataattgtttaacgtgatcaagtcaatatcatgttaa 15376075  T
Q  799 acaattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaaatat 868  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376074 acaattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaaatat 15376005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 15376886 - 15376508
Alignment:
Q  18 ggttgttgatgaaaggtacttgttgtaagtgctttgggtgtttgtttgaatataaatatgcgattttggaaggagatttttggtttcccgggnnnnnnn- 116  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  15376886 ggttgttgatgaaaggtacttgttgtaagttctttgagtgtttgtttgaatataaatatgcgattttggaaggagatttttggtttcccgggaaaaaaaa 15376787  T
Q  117 tgggttttctgattttttagcgccagttgtacaaagcatgtgcttgtggagggtgaaaattacctcaacaaccccttggtaaaatttagtgatacttatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||    
T  15376786 tgggttttctgattttttagcgccagttgtacaaagcatgtgcttgtggaggcagaaaattacctcaacaaccccttggtaaaatttagtgatatttatt 15376687  T
Q  217 t----ttaaaatagaagtaaaccatcaaattgatttatgtttatgtaagtcattctaaaagtaatatttgattatgttaatattttaaactatttaatgt 312  Q
    |    ||||||||||| |||| ||||| |||          | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376686 tatttttaaaatagaaataaatcatcatatt----------tctgtaagtcattctaaaagtaatatttgattatgttaatattttaaactatttaatgt 15376597  T
Q  313 ctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaacgtaaaaataaatattaaattgagaaatttttcacaaaatcag 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||    
T  15376596 ctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaacgtaaagataaagatcaaattgagaaatttttcacaaagtcag 15376508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 810 - 857
Target Start/End: Complemental strand, 18757431 - 18757384
Alignment:
Q  810 aacatcctgatcaagttaggcattcatctaagcatatcaatttgaaag 857  Q
    ||||||||||||||||||||||||||| ||||||| | | ||||||||    
T  18757431 aacatcctgatcaagttaggcattcatttaagcatgttagtttgaaag 18757384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 801 - 864
Target Start/End: Complemental strand, 10581637 - 10581574
Alignment:
Q  801 aattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaa 864  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||    
T  10581637 aattatgctaacatcctgatcaagttagacattcatataagcatattaatttgaaagcattaaa 10581574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 45122313 - 45122363
Alignment:
Q  228 agtaaaccatcaaattgatttatgtttatgtaagtcattctaaaagtaata 278  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||| |||||    
T  45122313 agtaaaccatcaaattgatctatgtttttgtaagtcattcttaaattaata 45122363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 799 - 857
Target Start/End: Complemental strand, 36461512 - 36461454
Alignment:
Q  799 acaattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaag 857  Q
    ||||||||| |||||| || |||||| ||||||||||||||||||||||| ||||||||    
T  36461512 acaattatgctaacattctaatcaagctaggcattcatctaagcatatcagtttgaaag 36461454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 799 - 864
Target Start/End: Original strand, 24209531 - 24209596
Alignment:
Q  799 acaattatgataacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaa 864  Q
    ||||||||| |||||||| ||| ||||||| |||||||||||| |||||| |||||||| ||||||    
T  24209531 acaattatgttaacatcccgattaagttagacattcatctaagtatatcagtttgaaagcattaaa 24209596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 6219603 - 6219698
Alignment:
Q  228 agtaaaccatcaaattgatttatgtttatgtaagtcattctaaaagtaatatttgattatgttaatattttaaactatttaatgtctttgtcaaaa 323  Q
    ||||||||||||||||||||| ||| | | ||||||||||| ||| || | | ||||| | ||||||||||||| || | | ||||||||||||||    
T  6219603 agtaaaccatcaaattgatttttgtctttataagtcattcttaaactagtctatgattttattaatattttaaattagtcactgtctttgtcaaaa 6219698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 7790319 - 7790364
Alignment:
Q  289 ttaatattttaaactatttaatgtctttgtcaaaagttttttaatt 334  Q
    ||||||||||||| || ||  |||||||||||||||||||||||||    
T  7790319 ttaatattttaaattaatttttgtctttgtcaaaagttttttaatt 7790364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 33429159 - 33429089
Alignment:
Q  289 ttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaac 359  Q
    ||||||||||||| || | ||| ||||| |||||||||||| |||||||| | ||||||||||| ||||||    
T  33429159 ttaatattttaaaataatcaatatctttatcaaaagtttttcaattaagtctttcgtcatgtgacaaaaac 33429089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 1163424 - 1163493
Alignment:
Q  289 ttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaa 358  Q
    ||||||||||||| || || |||| |||||||||||||| | |||||||| | ||||||||||| |||||    
T  1163424 ttaatattttaaaatagtttatgtgtttgtcaaaagtttctcaattaagtctctcgtcatgtgaaaaaaa 1163493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 662
Target Start/End: Complemental strand, 35052499 - 35052456
Alignment:
Q  619 gtgcatgatgcaagatttatctcacttgtgcattatagaattgg 662  Q
    ||||||||||||| |||| ||||||||||||| |||||||||||    
T  35052499 gtgcatgatgcaaaatttgtctcacttgtgcactatagaattgg 35052456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 809 - 857
Target Start/End: Complemental strand, 25244 - 25196
Alignment:
Q  809 taacatcctgatcaagttaggcattcatctaagcatatcaatttgaaag 857  Q
    |||||||||||||||||||||||| |||| ||||||||  |||||||||    
T  25244 taacatcctgatcaagttaggcatacatccaagcatattcatttgaaag 25196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 12428004 - 12427929
Alignment:
Q  289 ttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaacgtaaa 364  Q
    ||||||||| |||||| |  ||||||||||||||||||||| ||||  || | ||||||||||| |||||| ||||    
T  12428004 ttaatatttcaaactagtccatgtctttgtcaaaagtttttcaatttggtctctcgtcatgtgacaaaaacataaa 12427929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 660
Target Start/End: Complemental strand, 23940564 - 23940521
Alignment:
Q  617 ttgtgcatgatgcaagatttatctcacttgtgcattatagaatt 660  Q
    |||||||||||||||||  |||||||||||||||| ||||||||    
T  23940564 ttgtgcatgatgcaagacatatctcacttgtgcatcatagaatt 23940521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 650
Target Start/End: Original strand, 26979703 - 26979736
Alignment:
Q  617 ttgtgcatgatgcaagatttatctcacttgtgca 650  Q
    ||||||||||| ||||||||||||||||||||||    
T  26979703 ttgtgcatgatacaagatttatctcacttgtgca 26979736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 42709956 - 42710005
Alignment:
Q  289 ttaatattttaaactatttaatgtctttgtcaaaagttttttaattaagt 338  Q
    ||||||||||||| || | |||||||||||||||||||| | ||||||||    
T  42709956 ttaatattttaaaatagtcaatgtctttgtcaaaagtttctcaattaagt 42710005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 32520093 - 32520140
Alignment:
Q  311 gtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaa 358  Q
    ||||||||||||||||||| |||||||| | ||||||||||| |||||    
T  32520093 gtctttgtcaaaagtttttcaattaagtgtctcgtcatgtgacaaaaa 32520140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 310 - 396
Target Start/End: Complemental strand, 11023 - 10937
Alignment:
Q  310 tgtctttgtcaaaagttttttaattaagtttatcgtcatgtgataaaaacgtaaaaataaatattaaattgagaaatttttcacaaa 396  Q
    ||||||| |||||||||||| |||||||| | ||||| ||||| |||||| || ||| | | ||| |||||||||| |||| |||||    
T  11023 tgtctttatcaaaagtttttcaattaagtctctcgtcgtgtgaaaaaaacatagaaacataaatttaattgagaaacttttgacaaa 10937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University