View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11500_low_10 (Length: 518)

Name: NF11500_low_10
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11500_low_10
NF11500_low_10
[»] scaffold0059 (4 HSPs)
scaffold0059 (317-406)||(228-315)
scaffold0059 (317-403)||(6271-6357)
scaffold0059 (24-75)||(170-221)
scaffold0059 (12-75)||(6201-6264)
[»] scaffold0013 (2 HSPs)
scaffold0013 (317-403)||(239043-239129)
scaffold0013 (12-75)||(239136-239199)
[»] chr6 (1 HSPs)
chr6 (83-133)||(5180249-5180299)
[»] chr3 (3 HSPs)
chr3 (412-501)||(2508115-2508203)
chr3 (450-502)||(28577863-28577915)
chr3 (24-80)||(2508306-2508362)
[»] scaffold0212 (1 HSPs)
scaffold0212 (278-318)||(15765-15805)
[»] chr7 (2 HSPs)
chr7 (14-70)||(31848917-31848973)
chr7 (278-315)||(44194014-44194051)
[»] chr5 (1 HSPs)
chr5 (458-495)||(13391782-13391819)
[»] scaffold0082 (2 HSPs)
scaffold0082 (171-203)||(29376-29408)
scaffold0082 (134-170)||(55109-55145)
[»] chr2 (1 HSPs)
chr2 (282-318)||(36499491-36499527)
[»] chr8 (1 HSPs)
chr8 (98-133)||(30066548-30066583)
[»] scaffold0024 (1 HSPs)
scaffold0024 (134-170)||(55965-56001)
[»] chr4 (1 HSPs)
chr4 (171-203)||(5085724-5085756)


Alignment Details
Target: scaffold0059 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 406
Target Start/End: Original strand, 228 - 315
Alignment:
Q  317 aattggtgttcctccctctttctctatgtttttcgctctagagtaagtgattgatcccagatgaaatgtcacaaaagctatttataccat 406  Q
    ||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||  ||||||| ||||||||    
T  228 aattggtgttccttcctatttctctctgtttttcactctagagtaagtgattgatcccagctgaaatgtaac--aagctatgtataccat 315  T

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Target: scaffold0059; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 6271 - 6357
Alignment:
Q  317 aattggtgttcctccctctttctctatgtttttcgctctagagtaagtgattgatcccagatgaaatgtcacaaaagctatttatac 403  Q
    ||||| ||||||| ||||||||||| |  |||| |||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  6271 aattgatgttccttcctctttctctctactttttgctctagagtaagtgattgatcccagctgaaatgcaacaaaagctatttatac 6357  T

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Target: scaffold0059; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 170 - 221
Alignment:
Q  24 tttgccatcaagccttgatttctcaagaaatgctgttaatccaccttcaatc 75  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  170 tttgccatcaatccttgatttctcaagaaatgttgttaatccaccttcaatc 221  T

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Target: scaffold0059; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 6201 - 6264
Alignment:
Q  12 gagatgaattcatttgccatcaagccttgatttctcaagaaatgctgttaatccaccttcaatc 75  Q
    ||||||||||  ||||| ||| | ||||||||| |||||||||| |||||||||||||||||||    
T  6201 gagatgaattggtttgctatccatccttgatttatcaagaaatgttgttaatccaccttcaatc 6264  T

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Target: scaffold0013 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 403
Target Start/End: Complemental strand, 239129 - 239043
Alignment:
Q  317 aattggtgttcctccctctttctctatgtttttcgctctagagtaagtgattgatcccagatgaaatgtcacaaaagctatttatac 403  Q
    ||||| ||||||| ||||||||||| |  |||| |||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  239129 aattgatgttccttcctctttctctctactttttgctctagagtaagtgattgatcccagctgaaatgcaacaaaagctatttatac 239043  T

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Target: scaffold0013; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 239199 - 239136
Alignment:
Q  12 gagatgaattcatttgccatcaagccttgatttctcaagaaatgctgttaatccaccttcaatc 75  Q
    ||||||||||  ||||| ||| | ||||||||| |||||||||| |||||||||||||||||||    
T  239199 gagatgaattggtttgctatccatccttgatttatcaagaaatgttgttaatccaccttcaatc 239136  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 5180299 - 5180249
Alignment:
Q  83 aaccagcacctctgggatcaaaatacaggcccagcgaactacctttcattc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5180299 aaccagcacctctgggatcaaaatacaggcccagcgaactacctttcattc 5180249  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 412 - 501
Target Start/End: Complemental strand, 2508203 - 2508115
Alignment:
Q  412 ctgctcgcttaaccacgcccaggctcgcttagcgaccaaagctttcttcaccagtgggattctgccacatcagcaaagtggccctcaaac 501  Q
    ||||| ||||| |||||||||||||||||| |||| | |||||||||| ||||||||| || |||||| |||||||||||||||| ||||    
T  2508203 ctgcttgcttagccacgcccaggctcgcttggcgagcgaagctttctttaccagtggg-ttgtgccacgtcagcaaagtggccctaaaac 2508115  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 502
Target Start/End: Original strand, 28577863 - 28577915
Alignment:
Q  450 aagctttcttcaccagtgggattctgccacatcagcaaagtggccctcaaacc 502  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  28577863 aagctttcttcaccaatgggtttctgccacatcagcaaagtggccctcaaacc 28577915  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 2508362 - 2508306
Alignment:
Q  24 tttgccatcaagccttgatttctcaagaaatgctgttaatccaccttcaatctttac 80  Q
    ||||||||||||||||||||| |||| ||| | |||||||||||||||| |||||||    
T  2508362 tttgccatcaagccttgatttgtcaaaaaaagttgttaatccaccttcagtctttac 2508306  T

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Target: scaffold0212 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0212
Description:

Target: scaffold0212; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 15805 - 15765
Alignment:
Q  278 aacgctcaactgtggcacaattagctcaaattctttcagaa 318  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  15805 aacgctcaactgtggcacaattagttcaaattctttcagaa 15765  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 31848973 - 31848917
Alignment:
Q  14 gatgaattcatttgccatcaagccttgatttctcaagaaatgctgttaatccacctt 70  Q
    |||||||| ||||||||||||||| |||||||| |||||||| | ||||||||||||    
T  31848973 gatgaattaatttgccatcaagccatgatttcttaagaaatgtttttaatccacctt 31848917  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 44194051 - 44194014
Alignment:
Q  278 aacgctcaactgtggcacaattagctcaaattctttca 315  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  44194051 aacgctcaactgtggcacaattagttcaaatcctttca 44194014  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 458 - 495
Target Start/End: Original strand, 13391782 - 13391819
Alignment:
Q  458 ttcaccagtgggattctgccacatcagcaaagtggccc 495  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13391782 ttcaccagtgggtttctgccacatcagcaaagtggccc 13391819  T

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Target: scaffold0082 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 29376 - 29408
Alignment:
Q  171 gatcgagacgggaacagaactgaaagcaagtag 203  Q
    |||||||||||||||||||||||||||||||||    
T  29376 gatcgagacgggaacagaactgaaagcaagtag 29408  T

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Target: scaffold0082; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 55145 - 55109
Alignment:
Q  134 aatctttctgccgtgtgctctttttactattctttcg 170  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  55145 aatctttctgcggtgtgctctgtttactattctttcg 55109  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 36499491 - 36499527
Alignment:
Q  282 ctcaactgtggcacaattagctcaaattctttcagaa 318  Q
    |||||||||||||||||||| ||||||||||||||||    
T  36499491 ctcaactgtggcacaattagttcaaattctttcagaa 36499527  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 30066548 - 30066583
Alignment:
Q  98 gatcaaaatacaggcccagcgaactacctttcattc 133  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30066548 gatcaaaatacaggcccagtgaactacctttcattc 30066583  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 55965 - 56001
Alignment:
Q  134 aatctttctgccgtgtgctctttttactattctttcg 170  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  55965 aatctttctgcggtgtgctctgtttactattctttcg 56001  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 5085756 - 5085724
Alignment:
Q  171 gatcgagacgggaacagaactgaaagcaagtag 203  Q
    |||||| ||||||||||||||||||||||||||    
T  5085756 gatcgaaacgggaacagaactgaaagcaagtag 5085724  T

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