View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_11 (Length: 507)
Name: NF11500_low_11
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 500
Target Start/End: Complemental strand, 37631724 - 37631244
Alignment:
| Q |
20 |
gcggagaggaagaaaaagatcaagaaagggttttatcttattagttcaacttgtggtgtcgaggaaattgtggaagagattaaggtgttgtcgtggcgtt |
119 |
Q |
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| T |
37631724 |
gcggagaggaagaaaaagatcaagaaagggttttatcttattagttcaacttgtggtgtcgaggagattgtggaagagattaaggtgctgtcgtggcgtt |
37631625 |
T |
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| Q |
120 |
ggtttttgtctaggcttcatatttcgccgtgtttattctatgaatggacttggaatccaagggattgtctcttgaggtagttgttcagttgttggacaga |
219 |
Q |
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| T |
37631624 |
ggtttttgtctaggcttcatatttcgccgtgtttattctatgaatggacttggaatccaagggattgtctcttgaggtagttgttcagttgttggacaga |
37631525 |
T |
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| Q |
220 |
ggtgttgcttgtcaggttgtggttcaagtcgcagttttggttccagttttctgtttttctttggttaggcgctgctgctgatggcaggttttttggagag |
319 |
Q |
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| T |
37631524 |
ggtgttgcttgtcaggttgcggttcaggtcgcagttttggttccagttttctgtttttctttggttaggcgctgctgctgatggcaggttttttggagag |
37631425 |
T |
|
| Q |
320 |
tccctggctggttaaaattgagctaagtgctgctttgnnnnnnnggtttacttccggctgtgctgcggaatcctcttttgggttgttgttctgtcttgct |
419 |
Q |
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| T |
37631424 |
tcactggctggttaaaattgagctaagtgctgctttgtttttctggtttacttccggctgtgctacggaatcctcttttgggttgctgttctgtcttgct |
37631325 |
T |
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| Q |
420 |
aggtcaggttatttaggttgttgtgtatcgttggaggtcagggctatttttaacaaggaggatgtgttgtgggagcctttg |
500 |
Q |
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| T |
37631324 |
aggtcaggttatttaggctgttgtgtatcgttggaggtcagggctatttttaacaaggaggatgtgttgtgggagcctttg |
37631244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 30201992 - 30201943
Alignment:
| Q |
149 |
tgtttattctatgaatggacttggaatccaagggattgtctcttgaggta |
198 |
Q |
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| T |
30201992 |
tgtttattctatgaatgggattggaatccgagggattgtctaatgaggta |
30201943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 17197969 - 17198115
Alignment:
| Q |
61 |
tagttcaacttgtggtgtcgaggaaattgtggaagagattaaggtgttgtcgtggcgttggtttttgtctaggcttcatatttcgccgtgtttattctat |
160 |
Q |
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| T |
17197969 |
tagttcaacttgtggtatagaggagattgtggaagagattaaggtgtttttgtggcgtaggtctttgtctaggctttatatttatccgtgtttattctat |
17198068 |
T |
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| Q |
161 |
gaatggacttggaatccaagggattgtctcttgaggtagttgttcag |
207 |
Q |
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| T |
17198069 |
gaatggacttggaatccaagggattgtcacttgaggtagtttttcag |
17198115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 34774644 - 34774551
Alignment:
| Q |
86 |
attgtggaagagattaaggtgttgtcgtggcgttggtttttgtctaggcttcatatttcgccgtgtttattctatgaatggacttggaatccaa |
179 |
Q |
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| T |
34774644 |
attgtggatgagataaaggtgttatcgtggcgttggtctttggatcgtatccatatatcgccgtgtttgtactatgaatggtgttggaatccaa |
34774551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 11780066 - 11780110
Alignment:
| Q |
83 |
gaaattgtggaagagattaaggtgttgtcgtggcgttggtttttg |
127 |
Q |
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| T |
11780066 |
gaaattgtggaggagattaaggtttggtcgtggcgttggtctttg |
11780110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 42748830 - 42748727
Alignment:
| Q |
86 |
attgtggaagagattaaggtgttgtcgtggcgttggtttttgtctaggcttcatatttcgccgtgtttattctatgaatggacttggaatccaagggatt |
185 |
Q |
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| T |
42748830 |
attgtggatgagataaaggtgatatcgtggcgttggtctttggatcgtattcttatatcgccgtgtttgtactatgaatggtgttggaatccaaaggaat |
42748731 |
T |
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| Q |
186 |
gtct |
189 |
Q |
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|||| |
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| T |
42748730 |
gtct |
42748727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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