View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_12 (Length: 504)
Name: NF11500_low_12
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 157 - 408
Target Start/End: Original strand, 15424966 - 15425200
Alignment:
| Q |
157 |
agtttcttcagtcacagacaaaattcctccactcatatatagtgctccacctcactcttacgacaatcgtttttgaaggctctcttagttcacttgtttc |
256 |
Q |
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| T |
15424966 |
agtttcatcagtcacagaccaaattcctccactcata----gtgctccgcctcactcttacgacggtcgtttttgcaggctctcttggttcacttgtttc |
15425061 |
T |
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| Q |
257 |
tgtgaattccttcaggaattaaatatatgggaagaaaggcaatgagggaggagaagagaacgaaagatcacaatggataggggtagagagaaagaacaaa |
356 |
Q |
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| T |
15425062 |
tgtgaattccttcacgaattaaatatatgagaagaaaagcaatgagggaggagaagagaacgaaagatgacaatggataggggt-------------aaa |
15425148 |
T |
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| Q |
357 |
agagagtgtgataaataaagagatagattgaaaggtatctcgctgcctctcc |
408 |
Q |
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| T |
15425149 |
agagagtgtgataaataaagagatagattgaaagggatatcgctgcctctcc |
15425200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 15424794 - 15424933
Alignment:
| Q |
17 |
atattaatatagtcctgcaagctaacccaagcccaagaaatcataatttcatttgatcatcatcttcttccttccaagagagaaacaactacctccttct |
116 |
Q |
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| T |
15424794 |
atattaatatagtcctgcaagctaacccaagcccaagaaaccataatttcatctgatcatcatcttcttccttccaagagagaaacaactacctccttct |
15424893 |
T |
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| Q |
117 |
ccaatccagtttcttcgatccattttcatcatcttcttcc |
156 |
Q |
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| T |
15424894 |
ccaatccagtttcttcgatccattttcatcatcttcttcc |
15424933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 37059647 - 37059568
Alignment:
| Q |
25 |
atagtcctgcaagctaacccaagcccaagaaatcataatttcatttgatcatcatcttcttccttccaagagagaaacaa |
104 |
Q |
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| T |
37059647 |
atagtccagcaagctaacccaagcccaagaaaccctaatttcatctcatcatcatcttcttccttccatgagagaaacaa |
37059568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 27258991 - 27258884
Alignment:
| Q |
159 |
tttcttcagtcacagacaaaattcctccactcatatatagtgctccacctcactcttacgacaatcgtttttgaaggctctcttagttcacttgtttctg |
258 |
Q |
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|||||||| |||||||||||||||||| ||||| | |||||| |||||||||||||| | ||||||||| || |||||| |||| |||||||||| |
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| T |
27258991 |
tttcttcactcacagacaaaattcctctactcacaa----tgctccgcctcactcttacgatagtcgtttttgcagattctcttggttcgcttgtttctg |
27258896 |
T |
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| Q |
259 |
tgaattccttca |
270 |
Q |
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| T |
27258895 |
cgaattccttca |
27258884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 27259133 - 27259026
Alignment:
| Q |
50 |
caagaaatcataatttcatttgatcatcatcttcttccttccaag-agagaaacaactacctccttctccaatccagtttcttcgatccattttcatcat |
148 |
Q |
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||||||| | ||||||||| | ||| |||||||| ||||| || ||||||||||| |||||| ||||||| |||||||| ||| |||||||||||| |
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| T |
27259133 |
caagaaaccctaatttcatctcatcgtcatcttcctcctttcacttagagaaacaaccggctccttatccaatcgagtttctttgattcattttcatcat |
27259034 |
T |
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| Q |
149 |
cttcttcc |
156 |
Q |
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|||||||| |
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| T |
27259033 |
cttcttcc |
27259026 |
T |
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