View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_14 (Length: 489)
Name: NF11500_low_14
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Complemental strand, 1247029 - 1246572
Alignment:
| Q |
20 |
aggaatacatgtaaaaagtagaatatttatcgttaaaatttccatattgaatgaaacaaaacttgaatataagttatcaatgnnnnnnnn-aaacgggaa |
118 |
Q |
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| T |
1247029 |
aggaatacatgtaaaaagtagaatatttatcgttaaaatttccatattgaatgaaacaaaaattgaatataagttatcaatgtttttttttaaacgggaa |
1246930 |
T |
|
| Q |
119 |
aatttattaaaaactaaatatttgtttaatacgaatagggtcatgcaagattgtgacgaacatagcaaagaacgt-agtacacaaacgaaacactcaaaa |
217 |
Q |
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| T |
1246929 |
aatttattaaaatctaaatatttgtttaatatgaatagggtcatgcaagattgtgacaaacatagcaaagaacgttagtacacaatcgaaacactcaaaa |
1246830 |
T |
|
| Q |
218 |
gagaatccatatatttggtacatcaaaaacaccactcaacatagggttgcctccgaaagcaattaaaaactaaaccccaaaaccgaagccaactctaaaa |
317 |
Q |
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| T |
1246829 |
gagaacctatatatttggtacatca---------ctcaacatagggttgcctccgaaagcaattaaaaactaaaccccaaaatcgaagccaactctaaaa |
1246739 |
T |
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| Q |
318 |
tcaaagttaaacccccatacaacataaacaaattatttgtcaaactctcaaactccattgttagcgaccaccaaaaacaactttcaaacacatacgactt |
417 |
Q |
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||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |
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| T |
1246738 |
tcaaagtcaaacccccatacaacagaaacaaattatctgtcaaactctcaaactccattttgagcgacc-ccaaaaacaactttcaaacacatacgactt |
1246640 |
T |
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| Q |
418 |
gcctccaaacccctccaaaataaccaccaacctgcctaaaaaccactacaacatcatctctgcttctc |
485 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1246639 |
gccttcaaacccctccaaaataaccaccaacctgcctaaaaaccactacaacatcacctctgcttctc |
1246572 |
T |
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