View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_16 (Length: 465)
Name: NF11500_low_16
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Original strand, 6809334 - 6809766
Alignment:
| Q |
19 |
agtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcctcctatttaacaaactgtatacatga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6809334 |
agtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcctcttatttaacaaactgtatacatga |
6809433 |
T |
|
| Q |
119 |
ggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacagggtacacatctagaatcttttcaatcattt |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6809434 |
ggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacagggtacacatctagaatcttttcaatcattt |
6809533 |
T |
|
| Q |
219 |
cagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcctcattttctgtatagctctttattttacccatgttatc |
318 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||| |
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| T |
6809534 |
cagtcactcccatctttgctgcgattaaaattggtgacattgttctccttttcgcaatagcctcattttctgtattgctctttattttacctatgtcatc |
6809633 |
T |
|
| Q |
319 |
accaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcgctgaatcagttcattcattacttgcttagcccgaata |
418 |
Q |
| |
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|||||||| |||||||||| || |||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6809634 |
accaccattctcttcaacattagaacttggtcctgtgaaatcatacttgaataaagaagcatgctgaatcagttcattcattacttgcttagcccgaata |
6809733 |
T |
|
| Q |
419 |
agttttttcttcctcctttggattttctctacc |
451 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |
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| T |
6809734 |
tgtttttccttcctcctttggattttctctacc |
6809766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 61 - 451
Target Start/End: Original strand, 6817505 - 6817895
Alignment:
| Q |
61 |
ttgacgaaatgcagtttccttgattatactcctcctatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttc |
160 |
Q |
| |
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||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6817505 |
ttgacgaaatgcagtctccttgattattctcctctcatttaacaaactatatacatgaggttgcctattctctatggccaaaagaacaacatttttgttc |
6817604 |
T |
|
| Q |
161 |
tgactgtccacatcttgaatagccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcaattaaaataggtgacactg |
260 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
6817605 |
tgactgaccacatcttgaatagccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgacactg |
6817704 |
T |
|
| Q |
261 |
ttctccttttctcaatagcctcattttctgtatagctctttattttacccatgttatcaccaccatgatcttcaacatgaggacttggtcctgtaaaatc |
360 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6817705 |
ttctccttttcgcaatagcctcattttctgtattgctctttattttatccatgttatcaccaccatgatcttcaacatgaggacttggtcctgtaaaatc |
6817804 |
T |
|
| Q |
361 |
atacttgtataaagaagcgcgctgaatcagttcattcattacttgcttagcccgaataagttttttcttcctcctttggattttctctacc |
451 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6817805 |
atacttgtataaagaagcgcactgaatcagttcattcattacttgcttagcccgaataagttttttcttcctcctttggattttctctacc |
6817895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 451
Target Start/End: Original strand, 6831977 - 6832409
Alignment:
| Q |
19 |
agtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcctcctatttaacaaactgtatacatga |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||||| |
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| T |
6831977 |
agtagcagcaagatgcaatgcactgttaccattgatatcaacttgacgaaatgcagtctctttgattacactcctcttatttaacaaactgtatacatga |
6832076 |
T |
|
| Q |
119 |
ggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacagggtacacatctagaatcttttcaatcattt |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
6832077 |
ggttgcctattctctatggccaaaagaacaacattcttgttctgactgtccacatcgtgaatagccacagggtacatgtctagaatattttcaatcattt |
6832176 |
T |
|
| Q |
219 |
cagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcctcattttctgtatagctctttattttacccatgttatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||| | |||| | | |
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|
| T |
6832177 |
cagtcactcccatctttgctgcaattaaaattggtgacaccattctccttttctcaataacttcattttctgtattgctctttattttatctatgtcacc |
6832276 |
T |
|
| Q |
319 |
accaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcgctgaatcagttcattcattacttgcttagcccgaata |
418 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
6832277 |
accaccaagttcttcaacacgaggacttggtcctgtaaaatcatacttgtataaagaagcgtgctgaatcagttcattcatcacttgcttagcccgaatg |
6832376 |
T |
|
| Q |
419 |
agttttttcttcctcctttggattttctctacc |
451 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |
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|
| T |
6832377 |
tgtttttccttcttcctttggattttctctacc |
6832409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 6817474 - 6817508
Alignment:
| Q |
19 |
agtagcagcaaggtgcaatgcactgttaccattga |
53 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
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|
| T |
6817474 |
agtagcagcaaggtgcaatgcaccgttaccattga |
6817508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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