View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_17 (Length: 462)
Name: NF11500_low_17
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 56165352 - 56165181
Alignment:
| Q |
17 |
caaaattctgctgcaagctctgtcaatcgcttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatggtcctaatgctggtagg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56165352 |
caaaattctgctgcaagctctgtcaatcgcttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatggtcctaatgctggtagg |
56165253 |
T |
|
| Q |
117 |
aatgaaaccaggcctgtaatattgaaaattctgtacttattatccattcaataacttcgcaaaaattagaat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56165252 |
aatgaaaccaggcctgtaatattgaaaattctgtacttattatccattcaataacttcgcaaaaattagaat |
56165181 |
T |
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Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 358 - 453
Target Start/End: Complemental strand, 44261926 - 44261831
Alignment:
| Q |
358 |
gctaacaatagtttcactagtgaaactccagacgacatcccttcttccacatcactttctttcattgatctgtcaaaaaacatactccattcttct |
453 |
Q |
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|||||||||||| |||||||| ||||||||| || || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44261926 |
gctaacaatagtcgcactagtggaactccagatgaaattccttcttccagatcactttctttcattgatctgtcaagaaacatactccattcttct |
44261831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 44262819 - 44262575
Alignment:
| Q |
17 |
caaaattctgctgcaagctctgtcaatcgcttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatggtcctaatgctggtagg |
116 |
Q |
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||||| ||||||||||||||||| ||||||||||| ||| |||| ||||| | ||| |||| ||||| |||| ||| | ||||||||||| ||||| |
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| T |
44262819 |
caaaactctgctgcaagctctgtaaatcgcttaactacacaaacagaacaacaacaattgcagtagtcatgccaaaccagactgtcctaatgcttgtagg |
44262720 |
T |
|
| Q |
117 |
aatgaaaccaggcctgtaatattgaaaattctgtacttattatccattcaataacttc--gcaaaaattagaataatcatattccaatccatccgataac |
214 |
Q |
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||||||| |||||| || | ||||| ||||||| |||||| |||||| | || || |||||| |||| |||||| |||||||||||||| |
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| T |
44262719 |
aatgaaagcaggcc----atgt-----attctatacttat---ccattcgataactacttgcgaagattagagtaattctattcctatccatccgataac |
44262632 |
T |
|
| Q |
215 |
tgaaatgggacttaaa-atacacatacatcccaccaattagtaacataacaaaccaa |
270 |
Q |
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|||||||||||||||| |||||||||||||||| |||||| | ||||||||||||| |
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| T |
44262631 |
tgaaatgggacttaaagatacacatacatcccatcaattaatggcataacaaaccaa |
44262575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 44254270 - 44254206
Alignment:
| Q |
392 |
acatcccttcttccacatcactttctttcattgatctgtcaaaaaacatactccattcttctctc |
456 |
Q |
| |
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|||| |||||||||| | ||||||||| ||||||| | ||| ||||| |||||||||||||||| |
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| T |
44254270 |
acattccttcttccataccactttcttccattgatgtcacaagaaacaaactccattcttctctc |
44254206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 456
Target Start/End: Complemental strand, 39469323 - 39469219
Alignment:
| Q |
352 |
gaattcgctaacaatagtttcactagtgaaactccagacgacatcccttcttccacatcactttctttcattgatctgtcaaaaaacatactccattctt |
451 |
Q |
| |
|
||||| || ||||||||| ||||| |||||| |||||| || || |||||||||| |||||||||||||||||||| |||| ||||| ||| ||||||| |
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| T |
39469323 |
gaattagcaaacaatagtctcactggtgaaattccagatgatattccttcttccatgtcactttctttcattgatctctcaagaaacaaacttcattctt |
39469224 |
T |
|
| Q |
452 |
ctctc |
456 |
Q |
| |
|
|||| |
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|
| T |
39469223 |
ttctc |
39469219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 30088628 - 30088731
Alignment:
| Q |
352 |
gaattcgctaacaatagtttcactagtgaaactccagacgacatcccttcttccacatcactttctttcattgatctgtcaaaaaacatactccattctt |
451 |
Q |
| |
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||||| |||||||||||| ||||| ||| || ||| || ||||| ||||||||||||| ||||| ||||||||| | || | ||||| ||||| |||| |
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| T |
30088628 |
gaattggctaacaatagtctcactggtggaattcctgaggacattgcttcttccacatctctttcgttcattgatttctccagaaacaacctccactctt |
30088727 |
T |
|
| Q |
452 |
ctct |
455 |
Q |
| |
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|||| |
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|
| T |
30088728 |
ctct |
30088731 |
T |
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