View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_19 (Length: 446)
Name: NF11500_low_19
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 19096380 - 19096801
Alignment:
| Q |
1 |
accaattatgccttccaaataaatacaaaatgggtacaaaataaacttttaaacatgaagggaacaatttttaaaatttttgtggttcttttacctttat |
100 |
Q |
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| T |
19096380 |
accaattgtgccttccaaataaatagaaaatgggtacaaaataaacttttaaacatgaagggaacaatttttaaaaattttgtggttcttttacctttat |
19096479 |
T |
|
| Q |
101 |
ttctttatggtttatcatacaannnnnnnnnnnn--ccattctgttttttctctctattatatagcaagtcaatatcttgcacctactaatcgacaaaag |
198 |
Q |
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| T |
19096480 |
ttctctatggtttatcatacaatctctctctctctcccattctgttttttctctctattatatagcaagtcaatatcttgcacctactaatcgacaaaag |
19096579 |
T |
|
| Q |
199 |
aattaagaataaatttaaacaaannnnnnnattgaagacatatattatatacattagatcctctgataggttgaacttccgttttttgtggatggctata |
298 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19096580 |
aattaagaataaatttaaacaaatttttttattgaagacatatattatatacattagatcctctgataggttgaacttccgttttttgtggatggctata |
19096679 |
T |
|
| Q |
299 |
tccacgacactctacaaagtggtttattatggaatcatatacaagtgagaatccttagatatgtgtcacattaatatagagtctgcatcttaagttaact |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
19096680 |
tccacgacactctacaaagtggtttattatggaatcatatacaagtgagaatccttagatatgagtcacattaatgtagagtctgcatcttaagttaact |
19096779 |
T |
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| Q |
399 |
gtgcaccatcacatatatgttt |
420 |
Q |
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| T |
19096780 |
gtgcaccatctcatatatgttt |
19096801 |
T |
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