View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_23 (Length: 409)
Name: NF11500_low_23
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 38120438 - 38120819
Alignment:
| Q |
18 |
cgttgatattccaatagttgaacggattttactgtagaccagtttatttgccagcatatgaactggatataatattgtagccataattcttgcccatagc |
117 |
Q |
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| T |
38120438 |
cgttgatattccaatagttgaacggattttactgtagaccagtttatttgccagcatatgaactggatataatattgtagccataattcttgcccatagc |
38120537 |
T |
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| Q |
118 |
caatccaacattgcatagagataggaaggcgatttctgattcttggttaaacatttaccctataaacatattgtacaaaatttattatcattggtcaaca |
217 |
Q |
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| T |
38120538 |
caatccaacattgcatagagataggaaggtgctttctgattcttggttaaacatttaccctataaacatattgtacaaaatttattatcattggtcaaca |
38120637 |
T |
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| Q |
218 |
atagaattactatgatagaacatgtttgtttcaaactattttatgaaaaagtatctttttaggatata--cttttttaatttcttttgttcagcatttgg |
315 |
Q |
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| T |
38120638 |
atagaattactatgatagaacatgtttgtttcaaactattttatgaaaaagtatctttttaggatatatttttttttaatttcttttgttcagcatttgg |
38120737 |
T |
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| Q |
316 |
aaataatcataatctgagaaagatatgaaatatagagatgatgaccagacctcataaattcgcttgcactccatgtatccta |
397 |
Q |
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| T |
38120738 |
aaataatcataatctgagaaagatatgaaatatagagatgatgaccagacctcataaattcgcttgcactccatgtatccta |
38120819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 38132169 - 38132328
Alignment:
| Q |
27 |
tccaatagttgaacggattttactgtagaccagtttatttgccagcatatgaactggatataatattgtagccataattcttgcccatagccaatccaac |
126 |
Q |
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| T |
38132169 |
tccaatagctgaatggattttactgtagacaagtttctttgccagcatatgaattggaaataatattgtggcaataattcttgcccctagccaatccaac |
38132268 |
T |
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| Q |
127 |
attgcatagagataggaaggcgatttctgattcttggttaaacatttaccctataaacat |
186 |
Q |
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| T |
38132269 |
attgcatagagatacgaaggcgacttctggttcttggttaaacatttaccctgtaaacat |
38132328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 35109642 - 35109532
Alignment:
| Q |
20 |
ttgatattccaatagttgaacggattttactgtagaccagtttatttgccagcatatgaactggatataatattgtagccataattcttgcccatagcca |
119 |
Q |
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|||||| |||||||| |||| |||||||||||||||| | ||| |||| || | ||||| |||| |||||||||| || |||||||||||||||| || |
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| T |
35109642 |
ttgataatccaatagctgaatggattttactgtagacaaattttattgctagaagatgaattggaaataatattgtggcaataattcttgcccataaaca |
35109543 |
T |
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| Q |
120 |
atccaacattg |
130 |
Q |
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| T |
35109542 |
gtccaacattg |
35109532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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