View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_26 (Length: 363)
Name: NF11500_low_26
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 44574795 - 44574483
Alignment:
| Q |
18 |
atactctcatgctgctaaagtttaaatttcataaactctagttctattttagctattgttagat-ctttttccttagagaagcaccatgtagtttagttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44574795 |
atactctcatgctgctaaagtttaaatttcataaactctagttctcttttagttattgttagattctttttccttagagaagcaccatgtagtttagttt |
44574696 |
T |
|
| Q |
117 |
tggtctagttttatatgatttgcatctgaatcctttctatctggattagcttagagattagatttaaatttggttacatttggccttcattattataatt |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44574695 |
tggtctagttgtatatgatttgcatctgaatcctttctatctggattagcttagagattagatttaaatttggttacatttggccttcattattataatt |
44574596 |
T |
|
| Q |
217 |
tggtcaatcagttaaattcattttctttcaagaatacaaactcaaattttagtttttcctatacattagcccccacttttcacaatacatgtacattgtg |
316 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44574595 |
tggtcgatctgttaaattcattttctttcaagaatacaaactcaaattttagtttttcctatacattagcccccacttttcacaatacatgtacattgtg |
44574496 |
T |
|
| Q |
317 |
tcaatgatccaat |
329 |
Q |
| |
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||||||||||||| |
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| T |
44574495 |
tcaatgatccaat |
44574483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 25383067 - 25383102
Alignment:
| Q |
294 |
tttcacaatacatgtacattgtgtcaatgatccaat |
329 |
Q |
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| T |
25383067 |
tttcataatacatgtacattgtgtcaatgatccaat |
25383102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 10123339 - 10123310
Alignment:
| Q |
300 |
aatacatgtacattgtgtcaatgatccaat |
329 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10123339 |
aatacatgtacattgtgtcaatgatccaat |
10123310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 28245095 - 28245066
Alignment:
| Q |
300 |
aatacatgtacattgtgtcaatgatccaat |
329 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28245095 |
aatacatgtacattgtgtcaatgatccaat |
28245066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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