View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_27 (Length: 352)
Name: NF11500_low_27
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 46655886 - 46655576
Alignment:
| Q |
18 |
gtaaggtgagacgctgcctgaacaaacatgaaaacaatgtttgtcaagcagatttacataataattcnnnnnnnnnttataactacagttatatgttgaa |
117 |
Q |
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| T |
46655886 |
gtaaggtgagaagctgcctgaaaaaacatgaaaacaatgtttgtcaaggaaatttacataataattcaaaaata--ttataactacagttatatgttaaa |
46655789 |
T |
|
| Q |
118 |
taatagataatcaattgtcagatctccctctctgaatgccaaggccagtctnnnnnnnncaatggttctttcgtagtgagatttgatcatgtgatggata |
217 |
Q |
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| T |
46655788 |
taatagataatcaattgtcagatctccctctctgaatgccaaggccagtctaaaaaaaacaatggttctttcgtagtgagatttgatcatgtgatggata |
46655689 |
T |
|
| Q |
218 |
atggaat-aaatagtactactataaaagagatgtggaagaaagggatggtgataaagtaaatctagtttgatcttcaaaaacatcattaattggttatca |
316 |
Q |
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| T |
46655688 |
atggaataaaatagtactactataaaagagatgtggaagaaagggatggtg-------------agtttgatcttcaaaaacatcattaattggtcatca |
46655602 |
T |
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| Q |
317 |
tttatcaatctccgacaggacctatg |
342 |
Q |
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| T |
46655601 |
tttatcaatctccgacaggacctatg |
46655576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 47103556 - 47103683
Alignment:
| Q |
217 |
aatggaataaata--gtactactataaaagagatgtggaagaaagggatggtgataaagtaaatctagtttgatcttcaaaaacatcattaattggttat |
314 |
Q |
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| T |
47103556 |
aatggaataaatatagtactactataaaagtgatgtggaagaaagggatggtgaaatagtaaatctagtttgatcttcaaaaacatcattaattggtcat |
47103655 |
T |
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| Q |
315 |
catttatcaatctccgacaggacctatg |
342 |
Q |
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| T |
47103656 |
catttatcaatctccgacaggacctatg |
47103683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 47103338 - 47103486
Alignment:
| Q |
18 |
gtaaggtgagacgctgcctgaacaaacatgaaaacaatgtttgtcaagcagatttacataataattcnnnnnnnnnttataactacagttatatgttgaa |
117 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |
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| T |
47103338 |
gtaaggtgagaagctgcctgaaaaaacatgaaaacaatgtttgtcaaggaaatttacataataattcaaaaata--ttataactacagttatatgttgaa |
47103435 |
T |
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| Q |
118 |
taatagataatcaattgtcagatctccctctctgaatgccaaggccagtct |
168 |
Q |
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| T |
47103436 |
taatagataatcaattgtcagatacccctctctgagtgccaaggccagtct |
47103486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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