View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_3 (Length: 640)
Name: NF11500_low_3
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Complemental strand, 10795176 - 10794554
Alignment:
| Q |
1 |
ttggtggtggtggtgaattgtatattattggaggtggtgaatatattggagtgtcaccacatggtgcgcacttctcaactagctttcttgattccatagc |
100 |
Q |
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| T |
10795176 |
ttggtggtggtggtgaattgtatattattggaggtggtgaatatattggagtgtcaccacatggtgtgcacttctcaacaagctttcttgattccatagc |
10795077 |
T |
|
| Q |
101 |
attaattggaagagtaacacacacaagtagtaagatccaattgagaattcttagtggaattttactttgaggatccatgattgttttgatgggaattgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10795076 |
attaattggaagagtaacacacacaagtagtaagatcaaattgagaattcttagcggaattttactttgaggatccatgattgttttgatgggaattgat |
10794977 |
T |
|
| Q |
201 |
gtgagaattgtgtaaggattagaagaaaatgaggaaagtaaaggatttcttaagttgttaggtacatatgaaaatgtaaagtatgtatatgtaaaaggga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10794976 |
gtgagaattgtgtaaggattagaagaaaatgaggaaagtaaaggatttcttaagttgttaggtacatatgaaaatgtaaagtatgtatatgtaaaaggga |
10794877 |
T |
|
| Q |
301 |
cttttgggtttaggtatatttaattatggttttgagaaaattggagtgagggacacttgttctaattgtcctttattggagaggtctatcttttttggaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10794876 |
cttttgggtttaggtatatttaattatggttttgagaaaattggagtgagggacacttgttctaattgtcctttattggagaggtctatcttttttggaa |
10794777 |
T |
|
| Q |
401 |
atgtgaactccattagcatgtggctggtgtaaaatgtggggtccactatgcgcataaatccacattccttcacacctcattatcaataatttgattttgg |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10794776 |
atgtgaactccattagcatgtggctggtgtaaaatgtggggtccattatgcgcataaatccacattccttcacacctcaatatcaataatttgattttgg |
10794677 |
T |
|
| Q |
501 |
cttcatttggtggttgaattttggcacaattaggttataatcttggctcaaataagaaataacccccacattctttcttttttctgacacataattaccc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10794676 |
cttcatttggtggttgaattttggcacaattaggttataatcttggctcaaataagaaataacccccacattctttcttttttctgacacataattaccc |
10794577 |
T |
|
| Q |
601 |
catattctatttgcgtagcttct |
623 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
10794576 |
catattctatttgcgtagcttct |
10794554 |
T |
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