View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11500_low_30 (Length: 346)

Name: NF11500_low_30
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11500_low_30
NF11500_low_30
[»] chr4 (7 HSPs)
chr4 (21-334)||(7655383-7655696)
chr4 (23-330)||(7637631-7637941)
chr4 (23-321)||(7615805-7616106)
chr4 (119-329)||(7606801-7607014)
chr4 (125-329)||(7629186-7629393)
chr4 (119-192)||(39098372-39098445)
chr4 (26-66)||(7629452-7629492)
[»] chr7 (4 HSPs)
chr7 (36-315)||(8935359-8935641)
chr7 (137-318)||(8910525-8910709)
chr7 (36-284)||(8934418-8934669)
chr7 (36-189)||(8929963-8930116)
[»] chr6 (2 HSPs)
chr6 (86-285)||(6501119-6501318)
chr6 (87-258)||(11969547-11969718)
[»] chr3 (2 HSPs)
chr3 (125-329)||(40146736-40146940)
chr3 (119-268)||(8103105-8103254)
[»] scaffold0190 (1 HSPs)
scaffold0190 (230-258)||(5071-5099)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 334
Target Start/End: Original strand, 7655383 - 7655696
Alignment:
Q  21 tacatgctgcagcaaagaatacttgtgttgctgacatcctaaaacccacatatgttccttcggttgtccattcattttttcctttcaacgacgttaggaa 120  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||    
T  7655383 tacatgctgcagccaaggatacttgtgttgctgacatcctaaaacccacatatgttccttcggttgttcgttcattttttcctttcaatgacgttagaaa 7655482  T
Q  121 ctatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacggg 220  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  7655483 ctacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacgga 7655582  T
Q  221 cagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttccaaatg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7655583 cagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtttccaaatg 7655682  T
Q  321 gaattcaacgacct 334  Q
    ||||||||||||||    
T  7655683 gaattcaacgacct 7655696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 23 - 330
Target Start/End: Complemental strand, 7637941 - 7637631
Alignment:
Q  23 catgctgcagcaaagaatacttgtgttgctgacatcctaaaacccacatatgttccttcggttgtccattcattttttcctttcaacgacgttaggaact 122  Q
    ||||| |||||| |||||||||||||||| ||||||||| ||||||| || || ||| |  ||||  ||| ||| ||| ||||   ||| || || | ||    
T  7637941 catgccgcagcagagaatacttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagct 7637842  T
Q  123 atgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctt-taatttcaaccatgttgtagctgacgggc 221  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||||||||| || |||||||| |  | |||| ||||||||||| | ||||||      
T  7637841 atgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcattt-aaccatgttgtcgttgacggaa 7637743  T
Q  222 agtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgt---catcatcaaatatctaactccccaacgctagagcgttggtttccaaa 318  Q
    |||||  |||||||||||||||||| ||||||||||| |||||| |||||   |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  7637742 agtccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaa 7637643  T
Q  319 tggaattcaacg 330  Q
    |||  |||||||    
T  7637642 tggtgttcaacg 7637631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 7616106 - 7615805
Alignment:
Q  23 catgctgcagcaaagaatacttgtgttgctgacatcctaaaacccacatatgttccttcggttgtccattcattttttcctttcaacgacgttaggaact 122  Q
    |||||||||||  |||||||||||||||||||||||||| |||| || ||||| ||| |  ||||  ||||||||||  |||| | ||  |||   | ||    
T  7616106 catgctgcagctgagaatacttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagct 7616007  T
Q  123 atgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggca 222  Q
    | |||||||| |||||||| |||||||| |||||||| || |||||||||||||| || || ||||| |     |||||||||||||| | ||||||  |    
T  7616006 acgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggaga 7615907  T
Q  223 gtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgt---catcatcaaatatctaactccccaacgctagagcgttggtttccaaat 319  Q
    |||   |||||||||||||||||| ||||||||||| |||||| |||||   |||||||||||||||||  ||||||| |||||||||||||||||||||    
T  7615906 gtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaat 7615807  T
Q  320 gg 321  Q
    ||    
T  7615806 gg 7615805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 119 - 329
Target Start/End: Complemental strand, 7607014 - 7606801
Alignment:
Q  119 aactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacg 218  Q
    |||||||||||||| |||||||||||||||||||||||| | || |||||||||||||| || |||||||| |     |||||||||||||| | |||||    
T  7607014 aactatgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacg 7606915  T
Q  219 ggcagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatc---atcaaatatctaactccccaacgctagagcgttggtttcc 315  Q
    |  |||||  |||||||||||||||||| ||||||||||| ||||| ||||||  |    |||||||||| ||  ||||||| |||||||||||||||||    
T  7606914 gaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttcc 7606815  T
Q  316 aaatggaattcaac 329  Q
    |||||| |||||||    
T  7606814 aaatggtattcaac 7606801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 125 - 329
Target Start/End: Complemental strand, 7629393 - 7629186
Alignment:
Q  125 gaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagt 224  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||||||||  |||| ||||| |  |  |||||||||||||| | ||||||  |||    
T  7629393 gaaggcacgtcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagt 7629294  T
Q  225 ccacgtggcatttcatcaattcgtgggctgaaatgtcac---gtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttccaaatgg 321  Q
    ||  |||||||||||||||||| ||||||||||| ||||   || ||||||||||||||||||||||  | |||||    || |||||||||||||||||    
T  7629293 ccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatgg 7629194  T
Q  322 aattcaac 329  Q
     |||||||    
T  7629193 tattcaac 7629186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 39098445 - 39098372
Alignment:
Q  119 aactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctt 192  Q
    ||||| ||||||||||||||||||||| | || |||||||| || ||||| ||||| || || |||||||||||    
T  39098445 aactacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggctt 39098372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 7629492 - 7629452
Alignment:
Q  26 gctgcagcaaagaatacttgtgttgctgacatcctaaaacc 66  Q
    ||||||||  |||||||||||||||||||||||||| ||||    
T  7629492 gctgcagccgagaatacttgtgttgctgacatcctagaacc 7629452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 315
Target Start/End: Original strand, 8935359 - 8935641
Alignment:
Q  36 agaatacttgtgttgctgacatcctaaaacccacatatgttccttcggttgtccattcattttttcctttcaacgacgttaggaactatgaaggcacatc 135  Q
    |||||||||||||||||||||| ||| ||||||| || || ||  |  ||||  ||||||||||| |||| | ||| ||||| | ||| |||||||||||    
T  8935359 agaatacttgtgttgctgacattctagaacccacctacgtaccaccaattgttgattcattttttgctttaaccgatgttagaagctacgaaggcacatc 8935458  T
Q  136 aaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggct-ttaatttcaaccatgttgtagctgacgggcagtccacgtggca 234  Q
    ||||||||||||||| |||||||| || ||| || ||||||| || |||||||| |  | |||| ||||| | |||   ||||||  ||||   ||||||    
T  8935459 aaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgctcattt-aaccacgctgtcattgacggaaagtctgtgtggca 8935557  T
Q  235 tttcatcaattcgtgggctgaaatgtcac---gtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttcc 315  Q
    |||||||||||| ||||||||||| ||||   || ||||||||||||||||||||||  | ||||| ||||| |||||||||||    
T  8935558 tttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttcc 8935641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 318
Target Start/End: Original strand, 8910525 - 8910709
Alignment:
Q  137 aaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctt-taatttcaaccatgttgtagctgacgggcagtccacgtggcat 235  Q
    |||||||||||||| |||||||| || |||||||||||||| || |||||||| |  | |||| ||||||||||| | ||||||  |||||  |||||||    
T  8910525 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcattt-aaccatgttgtcgttgacggaaagtccgtgtggcat 8910623  T
Q  236 ttcatcaattcgtgggctgaaatgtcacgtggttgt---catcatcaaatatctaactccccaacgctagagcgttggtttccaaa 318  Q
    ||||| ||||| ||||||||||| |||||| |||||   ||| |||||||||||||  ||||||| ||||||||||||||||||||    
T  8910624 ttcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa 8910709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 284
Target Start/End: Original strand, 8934418 - 8934669
Alignment:
Q  36 agaatacttgtgttgctgacatcctaaaacccacatatgttccttcggttgtccattcattttttcctttcaacgacgttaggaactatgaaggcacatc 135  Q
    |||||||||||||||||||||| ||| ||||||| || || ||| |  ||||  ||||||||||| |||| | ||  ||||| | ||| |||||||||||    
T  8934418 agaatacttgtgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaaggcacatc 8934517  T
Q  136 aaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggct-ttaatttcaaccatgttgtagctgacgggcagtccacgtggca 234  Q
    ||||||||||||||| |||||||| || ||| || ||||||| || |||||||| |  | |||| ||||| | |||   ||||||  ||||   ||||||    
T  8934518 aaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggttgctcattt-aaccacgctgtcattgacggaaagtctgtgtggca 8934616  T
Q  235 tttcatcaattcgtgggctgaaatgtcac---gtggttgtcatcatcaaatat 284  Q
    |||||||||||| ||||||||||| ||||   || ||||||||||||||||||    
T  8934617 tttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatat 8934669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 8929963 - 8930116
Alignment:
Q  36 agaatacttgtgttgctgacatcctaaaacccacatatgttccttcggttgtccattcattttttcctttcaacgacgttaggaactatgaaggcacatc 135  Q
    |||||||||||||||||||||| ||| ||||||| || || ||| |  ||||  ||||||||||| |||| | ||  ||||| | ||| |||| ||||||    
T  8929963 agaatacttgtgttgctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaagtcacatc 8930062  T
Q  136 aaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattgg 189  Q
    |||||||||||||||  ||||||| || ||| || ||||||| || ||||||||    
T  8930063 aaaaccattgttggcatttcaagtaactgagttaattgacggtattttcattgg 8930116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 86 - 285
Target Start/End: Complemental strand, 6501318 - 6501119
Alignment:
Q  86 gtccattcattttttcctttcaacgacgttaggaactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttca 185  Q
    |||||||||||||||||||||||||  | ||| ||||| ||||||| ||||||||||||| | || || ||||| |||||| |||||| |||  |||| |    
T  6501318 gtccattcattttttcctttcaacggggctagaaactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagttagttggcggtgtcttta 6501219  T
Q  186 ttggctttaatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatc 285  Q
    |||| ||||  ||||||||||| ||  |||  ||  |||||| ||||||||| |||| ||| ||||||||||| ||||||||||||  | ||||||||||    
T  6501218 ttgggtttagattcaaccatgtggtcactggtggaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgttgtaatcaaatatc 6501119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 87 - 258
Target Start/End: Complemental strand, 11969718 - 11969547
Alignment:
Q  87 tccattcattttttcctttcaacgacgttaggaactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcat 186  Q
    |||| |||||||||||  | ||||  ||||| ||||||||||| |||||| | |||||| | || || ||||| |||||| ||||||| |||||||||||    
T  11969718 tccactcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcat 11969619  T
Q  187 tggctttaatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatcaattcgtgggctgaaat 258  Q
    ||||||||   |||| ||||| |  | ||||||   |||||| ||||||||||||||||| |||||||||||    
T  11969618 tggctttacaatcaatcatgtcgccgttgacggagtgtccacttggcatttcatcaattcatgggctgaaat 11969547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 329
Target Start/End: Original strand, 40146736 - 40146940
Alignment:
Q  125 gaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagt 224  Q
    |||||||||||| |||||||||| ||||| ||||| |||||| ||||||||||| |||||||||| ||||  || |||||||  || | ||||||  |||    
T  40146736 gaaggcacatcacaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagt 40146835  T
Q  225 ccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttccaaatggaat 324  Q
    |||| |||| |||||| ||||| |||||  |||| || |||||||||    ||||| |||| ||   |  ||||||||| ||||||||||||| ||| ||    
T  40146836 ccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtat 40146935  T
Q  325 tcaac 329  Q
    |||||    
T  40146936 tcaac 40146940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 268
Target Start/End: Complemental strand, 8103254 - 8103105
Alignment:
Q  119 aactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacg 218  Q
    ||||| |||||||||||| |||||||||| || || ||||| |||||| |||||||||||||||| ||||| |||| ||| |||||||| || | ||| |    
T  8103254 aactacgaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatg 8103155  T
Q  219 ggcagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggt 268  Q
    |    ||  | ||| ||||||| ||||||||||||||||| |||||||||    
T  8103154 gaacttcggcatggtatttcattaattcgtgggctgaaatctcacgtggt 8103105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 258
Target Start/End: Complemental strand, 5099 - 5071
Alignment:
Q  230 tggcatttcatcaattcgtgggctgaaat 258  Q
    |||||||||||||||||||||||||||||    
T  5099 tggcatttcatcaattcgtgggctgaaat 5071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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