View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_low_33 (Length: 337)
Name: NF11500_low_33
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_33 |
 | |
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| [»] scaffold0170 (1 HSPs) |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: scaffold0170 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 8392 - 8085
Alignment:
| Q |
14 |
aggccaaacaaacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| |
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|
| T |
8392 |
aggccaaacaaacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgatatatcaaacaatgagcaaagtttctaatt |
8293 |
T |
|
| Q |
114 |
tattcacacatccatgaaagtatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcatta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
8292 |
tattcacacatccatgaaagtatttaacttgttttaagctatttaggaaaatttgagcctcttgaagtaataatcctaagaaatccttaccttctcatta |
8193 |
T |
|
| Q |
214 |
ttcaagttattacattggacttgatcaacttatacaacatagaatcaaaattctgaaattaacaattctctttggacaaacaaagagaagaatcaacaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8192 |
ttcaagttattacattggacttgatcaacttatacaacatagaatcaaaattctgaaattaacaattctctttggacaaacaaagagaagaatcaacaat |
8093 |
T |
|
| Q |
314 |
tctaaatt |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
8092 |
tctaaatt |
8085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 25130628 - 25130927
Alignment:
| Q |
21 |
acaaacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcac |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25130628 |
acaaacacaccaacaggc--ccaaaaatactacatagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttctaatttattcac |
25130725 |
T |
|
| Q |
121 |
acatccatgaaagtatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagt |
220 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
25130726 |
acattcatgaaagtatttaacttgttttagactatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcgttattcaagt |
25130825 |
T |
|
| Q |
221 |
tattacattggacttgatcaacttatacaaca-tagaatcaaaattctgaaattaacaattctctttggacaaacaaagagaagaatcaacaattctaaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
25130826 |
tattacattggacttgatcaacttatacaacagtagaatcaaaattctgaaattaacaattctctttggacaaacaaagagaataattaacaattctaaa |
25130925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 13569395 - 13569656
Alignment:
| Q |
21 |
acaaacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcac |
120 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13569395 |
acaaacacaccaacatgc-ccaaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttctaatttattcac |
13569493 |
T |
|
| Q |
121 |
acatccatgaaagtatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagt |
220 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
13569494 |
acattcatgaaagtatttaacttgttttagactatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcgttatccaagt |
13569593 |
T |
|
| Q |
221 |
tattacattggacttgatcaacttatacaaca-tagaatcaaaattctgaaattaacaattct |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13569594 |
tattacattggacttgatcaacttatacaacagtagaatcaaaattctgaaattaacaattct |
13569656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 69 - 321
Target Start/End: Original strand, 18542373 - 18542626
Alignment:
| Q |
69 |
attatgctatattgctatatcaaacaatcagcaaagtttttaatttattcacacatccatgaaagtatttaacttgttttaagctatttaccaaaatttg |
168 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
18542373 |
attatgctatattgttatatcaaacaatcaacaaagtttctaatttattcacacattcatgaaagtatttaacttgttttagactatttaccaaaatttg |
18542472 |
T |
|
| Q |
169 |
agcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttattacattggacttgatcaacttatacaaca-tagaatcaaaattct |
267 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
18542473 |
agccttctgaagtaataatcctaagaaatccttacattctcattattcaagttattacattggacttgatcaacttatacagcattagaatcaaaattct |
18542572 |
T |
|
| Q |
268 |
gaaattaacaattctctttggacaaacaaagagaagaatcaacaattctaaatt |
321 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18542573 |
gaaattaacaattctctttggataaacaaagagaagaatcaacaattctaaatt |
18542626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 152 - 321
Target Start/End: Original strand, 10801921 - 10802087
Alignment:
| Q |
152 |
ctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttattacattggacttgatcaacttatacaac |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
10801921 |
ctatttaccaaaatttgagcctcttgaagtaaaaatcctaagaaatccttacattctc----ttcaagttattacattggacttgatcaacttatacaac |
10802016 |
T |
|
| Q |
252 |
a-tagaatcaaaattctgaaattaacaattctctttggacaaacaaagagaagaatcaacaattctaaatt |
321 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
10802017 |
agtagaatcaaaattctgaaattaacaattctctttggacaaagaaagagaagaattaacaattctaaatt |
10802087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 10800793 - 10800925
Alignment:
| Q |
21 |
acaaacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcac |
120 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
10800793 |
acaaacacaccaacaggcccaaaaaaatactacaaattggttataacaattatgct--------atatcaaacaatcagcaacgtttctaatttattcac |
10800884 |
T |
|
| Q |
121 |
acatccatgaaagtatttaacttgttttaagctatttacca |
161 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
10800885 |
acattcatgaaagtatttaacttgttttagactatttacca |
10800925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 44586332 - 44586385
Alignment:
| Q |
268 |
gaaattaacaattctctttggacaaacaaagagaagaatcaacaattctaaatt |
321 |
Q |
| |
|
||||| ||| ||||||| ||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
44586332 |
gaaatcaacgattctctctggacaaacaaggagaagaatcgacaattctgaatt |
44586385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 43301138 - 43301411
Alignment:
| Q |
21 |
acaaacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcac |
120 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43301138 |
acaaacacaccaacaggc-ccaaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttctaatttattcac |
43301236 |
T |
|
| Q |
121 |
acatccatgaaagtatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagt |
220 |
Q |
| |
|
|||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43301237 |
acattcatgaaagtatttaacttgttttagaccatttaccaaaatttgagcctcttgaagtaataatcctaagaaatcc-----------ttattcaagt |
43301325 |
T |
|
| Q |
221 |
tattacattggacttgatcaacttatacaaca-tagaatcaaaattctgaaattaacaattctctttggacaaacaaagagaagaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43301326 |
tattacattggacttgatcaacttatacaacagtagaatcaaaattctgaaattaacaattctctttggacaaacaaagagaagaa |
43301411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 43301685 - 43301735
Alignment:
| Q |
271 |
attaacaattctctttggacaaacaaagagaagaatcaacaattctaaatt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43301685 |
attaacaattctctttggacaaacaaagagaagaatcaacaattctaaatt |
43301735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 134 - 321
Target Start/End: Complemental strand, 141941 - 141753
Alignment:
| Q |
134 |
tatttaacttgttttaagctatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttacattctcattattcaagttattacattggac |
233 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
141941 |
tatttaacttgttttaaactatttaccaaaatttgagcctcttgaagtaataatcctaagaaatccttatattctcgttattcaagttattacattggag |
141842 |
T |
|
| Q |
234 |
ttgatcaacttatacaaca-tagaatcaaaattctgaaattaacaattctctttggacaaacaaagagaagaatcaacaattctaaatt |
321 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
141841 |
ttgatcaacttatgcaatagtagaatcaaaattctgaaattaaaaattctctttggacaaacaaagagaagaatcaacaattctaaatt |
141753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 142368 - 142251
Alignment:
| Q |
21 |
acaaacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcac |
120 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||||||| |
|
|
| T |
142368 |
acaaacacaccaacaggc-ccaaaaaatactacaaagtggttataacaattatgctataatgcaatattaaacaatcagcaaagtttctaatttattcac |
142270 |
T |
|
| Q |
121 |
acatccatgaaagtattta |
139 |
Q |
| |
|
|| | ||||||| |||||| |
|
|
| T |
142269 |
acgttcatgaaaatattta |
142251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 24500633 - 24500754
Alignment:
| Q |
21 |
acaaacacaccaacaggcgcccaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttttaatttattcac |
120 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
24500633 |
acaaacacaccaacaggc-ccaaaaaatactacaaagtggttataacaattatgctatattgctatatcaaacaatcagcaaagtttctaatttattgac |
24500731 |
T |
|
| Q |
121 |
acatccatgaaagtatttaactt |
143 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
24500732 |
acattcatgaaagtatttaactt |
24500754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 20623923 - 20623873
Alignment:
| Q |
271 |
attaacaattctctttggacaaacaaagagaagaatcaacaattctaaatt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20623923 |
attaacaattctctttggacaaacaaagagaagaatcaacaattctaaatt |
20623873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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