View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_34 (Length: 334)
Name: NF11500_low_34
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 315
Target Start/End: Complemental strand, 44950432 - 44950103
Alignment:
| Q |
6 |
agaagcataggaatccatctgcaagatcaacgaattatgaagtgaacctaataaaattttgaacatattgtaaaatttgagatctttacatgtgctgtat |
105 |
Q |
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| T |
44950432 |
agaagaataggaatccatctgcaagatcaacgaattatgaagtgaacctaataaa-ttttgaacatattgtaaaatttgagatctttacatgtgctgtat |
44950334 |
T |
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| Q |
106 |
ttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatgggtgtgctaaacaagatcaatcaagtatatgttggtgacctaga |
205 |
Q |
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| T |
44950333 |
ttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatggatgtgctaaacaagatcaatcaagtatatgttggtgacctaga |
44950234 |
T |
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| Q |
206 |
tcaacagattggtaagtatgaggaatccatc---------------------tgcattatcaacgaagatggactcaaaggtttatagtcactttatcgc |
284 |
Q |
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| T |
44950233 |
tcaacagattggtaagtattaggaatccatctgcaagatcaacgaatccatctgcattatcaacgaagatggactcaaaggtttatagtcactttatcgc |
44950134 |
T |
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| Q |
285 |
ttaaaataatgatcattacgtgtttggagtt |
315 |
Q |
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| T |
44950133 |
ttaaaataatgatcattacgtgtttggagtt |
44950103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 16464426 - 16464269
Alignment:
| Q |
73 |
ttgtaaaatttgagatctttacatgtgctgtatttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatgggtgtgctaaa |
172 |
Q |
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| T |
16464426 |
ttgtgaaatttgagatctttacatgtgctgtatttttcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaa |
16464327 |
T |
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| Q |
173 |
caagatcaatcaagtatatgttggtgacctagatcaacagattggtaagtatgaggaa |
230 |
Q |
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| T |
16464326 |
caagatcaatggagtatatgttggagacctagatcaacagattggtaagtatgaggaa |
16464269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 16471448 - 16471291
Alignment:
| Q |
73 |
ttgtaaaatttgagatctttacatgtgctgtatttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatgggtgtgctaaa |
172 |
Q |
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| T |
16471448 |
ttgtgaaatttgagatctttacatgtgttgtattatgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtattaaa |
16471349 |
T |
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| Q |
173 |
caagatcaatcaagtatatgttggtgacctagatcaacagattggtaagtatgaggaa |
230 |
Q |
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| T |
16471348 |
caagatcaatggagtatatgttggagacctagatcaacagattggtaagtatgaggaa |
16471291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 16493889 - 16493763
Alignment:
| Q |
104 |
atttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatgggtgtgctaaacaagatcaatcaagtatatgttggtgaccta |
203 |
Q |
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| T |
16493889 |
atttttgtcaatgtttgagaacaggacagaactggaattagttgaggaaatcgctatggacgttctaaacaagatcaatcgagtatatgttggtgaccta |
16493790 |
T |
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| Q |
204 |
gatcaacagattggtaagtatgaggaa |
230 |
Q |
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| T |
16493789 |
gatcaccaaattgctaagtatgaggaa |
16493763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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