View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_low_35 (Length: 332)
Name: NF11500_low_35
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 31808778 - 31808479
Alignment:
| Q |
1 |
ttgtattcttttaccatatatgagaaaatgtcacaaaattatattgcagagagaagacaacaaggataatgtctactactttggatcacttgccccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31808778 |
ttgtattcttttaccatatatgagaaaatgtcacaaaattatattgcagagagaagacaacaaggacaatgtctactactttggatcacttgccccaaat |
31808679 |
T |
|
| Q |
101 |
tattaaaattgattgtccacatttcaatttagataaattggattcataatgtagagctagaccatgcacggtctgattttgatgcaatggttgatatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31808678 |
tattaaaattgattgtccacatttcaatttagataaattggattcataatgtagagctagaccatgcacggtctgattttgatgcaatggttgatatgga |
31808579 |
T |
|
| Q |
201 |
ctgatccatgattgtttggatgcaaattaatccannnnnnnctctccaaatggtctagtagccaaattcacccacactatacgcagagaagtgaggtatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31808578 |
ctgatccatgattgtttggatgcaaattaatccatttttttctctccaaatggtctaggggccaaattcacccacactaagcgcagagaagtgaggtatt |
31808479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University