View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_36 (Length: 317)
Name: NF11500_low_36
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 38533347 - 38533057
Alignment:
| Q |
9 |
acatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533347 |
acatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcga |
38533248 |
T |
|
| Q |
109 |
aataccctttcggcgcatcgatcataataagatcccactccgtatcgtaaacctcatcgggtaaattctcaagcgcaagcttgcatgctttgtttccacg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533247 |
aataccctttcggcgcatcgatcataataagatcccactccgtatcgtaaacctcatcgggtaaattctcaagcgcaagcttgcatgctttgtttccacg |
38533148 |
T |
|
| Q |
209 |
tagaaaagctttagaaggtgaacacataggttccttgcggtaggaggagatgagtttgttggcttcacgaagctgggttcgataacgaacg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38533147 |
tagaaaagctttagaaggtgaacacataggttccttgcggtaggaggagatgagtttgctggcttcacgaagctgggttcgataacgaacg |
38533057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 34715115 - 34715272
Alignment:
| Q |
9 |
acatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcga |
108 |
Q |
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||||||||||||||||| ||||||||||| || || || ||||| |||||||| || | |||||| | ||||||||||||||||||||||||||||| |
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| T |
34715115 |
acatcatgcaaaaacacgtgcgtcacaccggaaccttttctatttctcgccatcaccgtcattgaaaatatcgccgccattctccccggcgcctccgcga |
34715214 |
T |
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| Q |
109 |
aataccctttcggcgcatcgatcataataagatcccactccgtatcgtaaacctcatc |
166 |
Q |
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|||| ||| |||||||||||||||| || | |||||||||||| ||||||| |||||| |
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| T |
34715215 |
aataacctctcggcgcatcgatcattatcaaatcccactccgtttcgtaaatctcatc |
34715272 |
T |
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