View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_38 (Length: 284)
Name: NF11500_low_38
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 11207963 - 11208122
Alignment:
| Q |
15 |
atgaatgaaaggaaaaaatataacatgagaatgaagtcatattggtgagacatttcttttattactagagatagattaattgatacaaaataaaatatct |
114 |
Q |
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| T |
11207963 |
atgaatgaaaggaaaaaatataacatgagaatgaagtcatattggtgagacatttcttttattaccgaagatagattaattgata-aaaaaaaaatatct |
11208061 |
T |
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| Q |
115 |
catccttaagtttgcatttccaagataaaagaaaagaatagaatatcgaaagttcattata |
175 |
Q |
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| T |
11208062 |
catccttaagtttgcatttccaagataaaagaaaataatagaatattgaaaattcgttata |
11208122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 140 - 269
Target Start/End: Original strand, 11208141 - 11208270
Alignment:
| Q |
140 |
taaaagaaaagaatagaatatcgaaagttcattataacaaaaaatgattccaagatatttttatgaaaagttcattatagcattactatacatttttata |
239 |
Q |
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| T |
11208141 |
taaaagaaaggaatagaatatcgaaagttcattataacaaaaaataattccaaaacatttttatcaaaagttcattatagcattattatacatttttatt |
11208240 |
T |
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| Q |
240 |
ctaagtttatatctatacatacttcttcct |
269 |
Q |
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| T |
11208241 |
ctaagtttatatctatacatacttcttcct |
11208270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 2567771 - 2567814
Alignment:
| Q |
56 |
ttggtgagacatttcttttattactagagatagattaattgata |
99 |
Q |
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| T |
2567771 |
ttggtgagagacttcttttattactagagatagattaattgata |
2567814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 29788863 - 29788895
Alignment:
| Q |
68 |
ttcttttattactagagatagattaattgatac |
100 |
Q |
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| T |
29788863 |
ttcttttattactagaaatagattaattgatac |
29788895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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