View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11500_low_39 (Length: 277)

Name: NF11500_low_39
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11500_low_39
NF11500_low_39
[»] chr6 (37 HSPs)
chr6 (1-242)||(29894853-29895094)
chr6 (5-242)||(29866953-29867193)
chr6 (5-242)||(30126510-30126750)
chr6 (2-202)||(24271461-24271662)
chr6 (5-165)||(24263284-24263447)
chr6 (5-236)||(29085322-29085555)
chr6 (5-202)||(29887601-29887800)
chr6 (5-202)||(29929577-29929776)
chr6 (6-202)||(29365917-29366115)
chr6 (8-202)||(28926043-28926239)
chr6 (5-160)||(29898377-29898535)
chr6 (11-164)||(24731165-24731321)
chr6 (11-168)||(29116571-29116731)
chr6 (11-155)||(29903547-29903694)
chr6 (11-168)||(29099653-29099813)
chr6 (11-155)||(29348140-29348287)
chr6 (5-86)||(29835519-29835600)
chr6 (11-155)||(29882745-29882892)
chr6 (11-155)||(29909901-29910048)
chr6 (11-155)||(29912282-29912429)
chr6 (11-164)||(24886099-24886255)
chr6 (11-152)||(29078837-29078981)
chr6 (11-115)||(15714577-15714681)
chr6 (11-152)||(29074073-29074217)
chr6 (11-152)||(29106646-29106790)
chr6 (7-168)||(30999527-30999691)
chr6 (5-94)||(29890034-29890123)
chr6 (11-115)||(29914302-29914406)
chr6 (11-145)||(15726741-15726878)
chr6 (1-164)||(25451424-25451587)
chr6 (11-168)||(24889775-24889935)
chr6 (13-163)||(30059831-30059981)
chr6 (117-202)||(29890119-29890203)
chr6 (13-115)||(29357564-29357666)
chr6 (13-125)||(29930380-29930495)
chr6 (11-95)||(29946747-29946831)
chr6 (11-115)||(29210978-29211082)
[»] scaffold0573 (1 HSPs)
scaffold0573 (8-202)||(4444-4640)
[»] scaffold0237 (1 HSPs)
scaffold0237 (11-155)||(22653-22800)
[»] chr3 (2 HSPs)
chr3 (13-126)||(24208754-24208867)
chr3 (7-115)||(11991618-11991726)
[»] chr1 (2 HSPs)
chr1 (5-146)||(10130441-10130585)
chr1 (1-140)||(19490550-19490692)
[»] scaffold0054 (1 HSPs)
scaffold0054 (34-155)||(53181-53305)
[»] chr2 (1 HSPs)
chr2 (11-115)||(15062461-15062565)
[»] scaffold0652 (1 HSPs)
scaffold0652 (15-115)||(880-980)
[»] scaffold0019 (1 HSPs)
scaffold0019 (11-115)||(125708-125812)
[»] scaffold0014 (2 HSPs)
scaffold0014 (48-163)||(137721-137839)
scaffold0014 (11-115)||(140570-140674)
[»] scaffold0308 (1 HSPs)
scaffold0308 (8-65)||(9302-9359)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 29894853 - 29895094
Alignment:
Q  1 ttgactttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894853 ttgactttgttgtcaaaaatgaaagacaatagttgcattccagatgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgata 29894952  T
Q  101 aggcggagaaacttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894953 aggcggagaaacttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatat 29895052  T
Q  201 ttcaatttgatatcgtcatttcattttatgtacttgtctctg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29895053 ttcaatttgatatcgtcatttcattttatgtacttgtctctg 29895094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 29866953 - 29867193
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggc 104  Q
    |||||||||||||||||||||||||||||||| ||||| | ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29866953 ctttgttgtcaaaaatgaaagacaatagttgctttccaaatgccttaacttatgaaataatcatccgttctctgtttgataaagatgaaaatgataaggc 29867052  T
Q  105 ggagaaacttc---gtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatatt 201  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  29867053 ggagaaacttcttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatattttgctatgtaaacattgttatattgtttttatatt 29867152  T
Q  202 tcaatttgatatcgtcatttcattttatgtacttgtctctg 242  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  29867153 tcaatttgatatcatcatttcattttatgtacttgtctctg 29867193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 30126750 - 30126510
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggc 104  Q
    ||||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30126750 ctttgttgttagaaatgaaagacaatagttgcattccaaacgttgtaacttatgaaataatcatccgttctctgtttgataaagatgaaaatgataaggc 30126651  T
Q  105 ggagaaa---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatatt 201  Q
    |||||||    |||||||||||||||| ||||  ||| | ||||| ||||||||||| | ||  |||||||||||||| || ||||||| | ||||||||    
T  30126650 ggagaaaattattcgtgaaatgattacaagagatctactataagattgaaactaggtcaaattgtttgctatataaacttttttatattatatttatatt 30126551  T
Q  202 tcaatttgatatcgtcatttcattttatgtacttgtctctg 242  Q
    |||| |||||| | ||||||||||||||||||||| |||||    
T  30126550 tcaacttgatagcatcatttcattttatgtacttgcctctg 30126510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 24271662 - 24271461
Alignment:
Q  2 tgactttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataa 101  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  24271662 tgactttgttgtcaaaaatgaaagacaattgttgcattccaaatgctgtaacttatgaaataatcatccgttctctgtttgataacgatgaaaatgataa 24271563  T
Q  102 ggcggagaa--acttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttata 199  Q
    |||||||||   |||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||| ||    |||||||||||| ||||||    
T  24271562 ggcggagaacttcttcgtgaaatgattacgagaggcatattttaagactgaaactaggtaagatgtatt-ctatttatctgttgttatattgtatttata 24271464  T
Q  200 ttt 202  Q
    |||    
T  24271463 ttt 24271461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 24263447 - 24263284
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  24263447 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgccattacttatgaaataatcatctgttctctgtttgataaagatgaaaatgataaggc 24263348  T
Q  105 ggagaaa---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgt 165  Q
    |||||||   ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  24263347 ggagaaacttcttcgtgaaatgattacaagaggtctattgtaagactgaaactaggtaagatgt 24263284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 29085322 - 29085555
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggc 104  Q
    |||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||| ||||| |||||  ||||||||||||||||    
T  29085322 ctttgttgtcaaaaatgaaagacagtagttgcattccaaacgccgtaacttatgaaataaccatccgttctctgttggataacaatgaaaatgataaggc 29085421  T
Q  105 ggagaaac---ttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatatt 201  Q
    ||||||||   |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||   ||||||||||||| ||||||||    
T  29085422 ggagaaactttttcgtgaaatgattacgagaggtctattgtaagactgaaattaggtaagatgtttt-ctatgtatctattgttatattgtatttatatt 29085520  T
Q  202 tcaatttgatatcgtcatttcattttatgtacttg 236  Q
    | |   | ||  | |||||||||||||||||||||    
T  29085521 taagcataattgcatcatttcattttatgtacttg 29085555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 29887601 - 29887800
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggc 104  Q
    |||||||||||||||||||||||||||||||| ||||| | ||  ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  29887601 ctttgttgtcaaaaatgaaagacaatagttgctttccaaatgccttaacttatgaaataatcatccgttctctgtttgataatgatgaaaatgataaggc 29887700  T
Q  105 ggagaa---acttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatatt 201  Q
    ||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| ||   ||| ||||||||| ||||||||    
T  29887701 ggagaatcttcttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagctgtatt-ctatttatctattattatattgtatttatatt 29887799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 29929577 - 29929776
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggc 104  Q
    ||||| ||||||||||| |||| ||| |||||||||||||||| || |||||||||||||||||| |||| || |||||||||||| |||||||||||||    
T  29929577 ctttgctgtcaaaaatggaagaaaatggttgcattccagacgccgttacttatgaaataatcatctgttctctatttgataaagataaaaatgataaggc 29929676  T
Q  105 ggagaaa---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatatt 201  Q
     ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    |||||||||||| ||||||||    
T  29929677 agagaaacttcttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgtttt-ctatttatctgttgttatattgtatttatatt 29929775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 29366115 - 29365917
Alignment:
Q  6 tttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcg 105  Q
    |||||||||||||||| |||| ||| ||||||||||| |||| || |||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  29366115 tttgttgtcaaaaatggaagaaaatggttgcattccaaacgccgttacttatgaaataatcatctgttctttgtttgataaagatgaaaatgataaggcg 29366016  T
Q  106 gagaaa---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatattt 202  Q
    ||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| ||    |||||||||||| |||||||||    
T  29366015 gagaaacttcttcgtgaaatgattacgagaggcctattttaagactgaaactaggtaaaatgtttt-ctatttatttgttgttatattgtatttatattt 29365917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 28926239 - 28926043
Alignment:
Q  8 tgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcgga 107  Q
    |||||||||||||| |||| ||| ||||||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28926239 tgttgtcaaaaatggaagaaaatggttgcattccaaacgccgttacttatgaaataatcatccgttctctgtttgataaagatgaaaatgataaggcgga 28926140  T
Q  108 gaaa---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatattt 202  Q
    ||||   |||| |||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||| ||   |||||||||| || |||||||||    
T  28926139 gaaacttcttcttgaaatgattacgagagggctattgtaagattgaaactaggtatgatgtttt-ctatttatctattgttatatggtatttatattt 28926043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 29898377 - 29898535
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggc 104  Q
    ||||| || |||||||| |||| ||| ||||||||||| ||||  | |||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  29898377 ctttgctgccaaaaatggaagaaaatggttgcattccaaacgccattacttatgaaataatcatctgttctctgtttgataaagatgaaaatgataaggc 29898476  T
Q  105 ggagaaa---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaa 160  Q
    |||||||   |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  29898477 ggagaaacttcttcgtgaaatgattatgagaggcctattataagactgaaactaggtaa 29898535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 24731165 - 24731321
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| | ||||||||| | |||  ||||||||||||| | |||| ||| ||||| || |||||||||||||||| ||| |||||    
T  24731165 tgtcaaaaatggaagacaatggatgcattccaaatgctaaaacttatgaaatagttatcctttctctgttcgaaaaagatgaaaatgatatggcagagaa 24731264  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatg 164  Q
    |   ||||||||||||||| | ||||| ||| ||||||||||||||||||| |||||    
T  24731265 acttcttcgtgaaatgattgcaagaggtctactgtaagactgaaactaggtgagatg 24731321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 29116571 - 29116731
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| | ||||||||||| |||  ||||||||||||||| |||| ||| |||||  | |||||||||||||||| ||| |||||    
T  29116571 tgtcaaaaatggaagacaatggctgcattccagatgctaaaacttatgaaataattatcctttctctgttcaaaaaagatgaaaatgatatggcagagaa 29116670  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgtttt 168  Q
    |   ||||||||||||||  ||||||| ||| ||||| |||||||||| ||||||| ||||    
T  29116671 acttcttcgtgaaatgatcgcgagaggtctactgtaaaactgaaactatgtaagatatttt 29116731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 29903547 - 29903694
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||| ||| | ||||||||||| |||  ||||||||||||||| |||| ||| ||||| || |||||||||||||||| ||| |||||    
T  29903547 tgtcaaaaatggaagagaatggatgcattccagatgctaaaacttatgaaataattatcctttctctgttcgaaaaagatgaaaatgatatggcagagaa 29903646  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaacta 155  Q
    |   |||||||||||||| | | |||| ||||||||||||||||||||    
T  29903647 acttcttcgtgaaatgatcatgcgaggtctattgtaagactgaaacta 29903694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 29099653 - 29099813
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| | ||||||||||| |||  ||||||||||||||| |||| ||| |||||  | |||||||||||||||| ||| |||||    
T  29099653 tgtcaaaaatggaagacaatggctgcattccagatgctaaaacttatgaaataattatcctttctctgttcaaaaaagatgaaaatgatatggcagagaa 29099752  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgtttt 168  Q
    |   ||||||||||||||  ||||||| |||  |||| |||||||||| ||||||| ||||    
T  29099753 acttcttcgtgaaatgatcgcgagaggtctaccgtaaaactgaaactatgtaagatatttt 29099813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 29348287 - 29348140
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| | ||||||||| | |||  ||||||||||||||| |||| ||| ||||| || |||||||||||||||| ||| |||||    
T  29348287 tgtcaaaaatggaagacaatggctgcattccaaatgctaaaacttatgaaataattatcctttctctgttcgaaaaagatgaaaatgatatggcagagaa 29348188  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaacta 155  Q
    |   ||||||||||||||  || |||| ||||||||||||| ||||||    
T  29348187 acttcttcgtgaaatgatcgcgcgaggtctattgtaagactaaaacta 29348140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 29835519 - 29835600
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataa 86  Q
    |||||||||||||||||||||||||||||||| ||||| | ||  ||||||||||||||||||||||||| |||||||||||    
T  29835519 ctttgttgtcaaaaatgaaagacaatagttgctttccaaatgccttaacttatgaaataatcatccgttctctgtttgataa 29835600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 29882745 - 29882892
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||| ||| | ||||||||||| |||  ||||||||||||||| |||| ||| ||||| || |||||||||||||||| ||| |||||    
T  29882745 tgtcaaaaatggaagagaatggatgcattccagatgctaaaacttatgaaataattatcctttctctgttcgaaaaagatgaaaatgatatggcagagaa 29882844  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaacta 155  Q
    |   |||||||||||||| | | |||| ||||||||||| ||||||||    
T  29882845 acttcttcgtgaaatgatcatgcgaggtctattgtaagattgaaacta 29882892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 29909901 - 29910048
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||| ||| | ||||||||||| |||  ||||||||||||||| |||| ||| ||||| || |||||||||||||||| ||| |||||    
T  29909901 tgtcaaaaatggaagagaatggatgcattccagatgctaaaacttatgaaataattatcctttctctgttcgaaaaagatgaaaatgatatggcagagaa 29910000  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaacta 155  Q
    |   |||||||||||||| | | |||| ||||||||||| ||||||||    
T  29910001 acttcttcgtgaaatgatcatgcgaggtctattgtaagattgaaacta 29910048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 29912282 - 29912429
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||| ||| | ||||||||||| |||  ||||||||||||||| |||| ||| ||||| || |||||||||||||||| ||| |||||    
T  29912282 tgtcaaaaatggaagagaatggatgcattccagatgctaaaacttatgaaataattatcctttctctgttcgaaaaagatgaaaatgatatggcagagaa 29912381  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaacta 155  Q
    |   |||||||||||||| | | |||| ||||||||||| ||||||||    
T  29912382 acttcttcgtgaaatgatcatgcgaggtctattgtaagattgaaacta 29912429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 24886255 - 24886099
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    |||| |||||| |||||||| | ||||||||||| |||  || |||||||||| | |||| ||| ||||| || |||||||||||||||| ||| |||||    
T  24886255 tgtccaaaatggaagacaatggctgcattccagatgctaaaatttatgaaatagttatcctttctctgttcgaaaaagatgaaaatgatatggcagagaa 24886156  T
Q  111 actt---cgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatg 164  Q
    ||||   |||||||||||  ||||||| ||| ||||| ||||||||||||| |||||    
T  24886155 acttctccgtgaaatgatcgcgagaggtctactgtaaaactgaaactaggtgagatg 24886099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 29078837 - 29078981
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| | ||||||||||| |||  ||||||||||||||| |||| ||| |||||  | |||||||||||||||| ||| |||||    
T  29078837 tgtcaaaaatggaagacaatggctgcattccagatgctaaaacttatgaaataattatcctttctctgttcaaaaaagatgaaaatgatatggcagagaa 29078936  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaa 152  Q
    |   ||||||||||||||  ||||||| ||| ||||| |||||||    
T  29078937 acttcttcgtgaaatgatcgcgagaggtctactgtaaaactgaaa 29078981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 15714681 - 15714577
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||||||| ||| |||||| | || ||| | || ||||| ||||||||||| |||||    
T  15714681 tgtcaaaaatggaagacaatggttgcattccagatgctgtaacttatgaaacaattatccgtgctctctttaaaaatgatgagaatgataaggcagagaa 15714582  T
Q  111 acttc 115  Q
    |||||    
T  15714581 acttc 15714577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 29074073 - 29074217
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| |  |||||||||| |||  ||||||||||||||| |||| ||| |||||  | |||||||||||||||| ||| |||||    
T  29074073 tgtcaaaaatggaagacaatggccgcattccagatgctaaaacttatgaaataattatcctttctctgttcaaaaaagatgaaaatgatatggcagagaa 29074172  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaa 152  Q
    |   ||||||||||||||  ||||||| ||| ||||| |||||||    
T  29074173 acttcttcgtgaaatgatcgcgagaggtctactgtaaaactgaaa 29074217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 29106646 - 29106790
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| |  |||||||||| |||  ||||||||||||||| |||| ||| |||||  | |||||||||||||||| ||| |||||    
T  29106646 tgtcaaaaatggaagacaatggccgcattccagatgctaaaacttatgaaataattatcctttctctgttcaaaaaagatgaaaatgatatggcagagaa 29106745  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaa 152  Q
    |   ||||||||||||||  ||||||| ||| ||||| |||||||    
T  29106746 acttcttcgtgaaatgatcgcgagaggtctactgtaaaactgaaa 29106790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 30999691 - 30999527
Alignment:
Q  7 ttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcgg 106  Q
    ||||||||||||||| |||||||| ||||||||||| | |||  || ||||||| || | || | ||| || || || |||||||||||||| | ||| |    
T  30999691 ttgttgtcaaaaatggaagacaatggttgcattccaaatgctaaaatttatgaactagttattccttctctcttcgaaaaagatgaaaatgacatggcag 30999592  T
Q  107 agaaacttc---gtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgtttt 168  Q
    |||||||||   ||||||||||| ||||||| ||| ||||| | ||||||||||||||| |||||    
T  30999591 agaaacttcttcgtgaaatgattgcgagagggctactgtaaaattgaaactaggtaagaggtttt 30999527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 29890034 - 29890123
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaa 94  Q
    ||||| ||||||||||| |||| ||| |||||||| || |||| |||||||||||||||||||||||||| ||||||| ||| |||||||    
T  29890034 ctttgctgtcaaaaatggaagaaaatggttgcatttcaaacgccgtaacttatgaaataatcatccgttctctgtttgctaacgatgaaa 29890123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 29914302 - 29914406
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||| ||| | ||||||||||| |||  ||||||||||||||| |||| ||| ||||| || |||||||||||||||| ||| |||||    
T  29914302 tgtcaaaaatggaagagaatggatgcattccagatgctaaaacttatgaaataattatcctttctctgttcgaaaaagatgaaaatgatatggcagagaa 29914401  T
Q  111 acttc 115  Q
    |||||    
T  29914402 acttc 29914406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 15726878 - 15726741
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||||||  ||| | |||| | || ||| | || ||||| ||||||||||| ||| |    
T  15726878 tgtcaaaaatggaagacaatggttgcattccagatgctgtaacttatgaaccaattaaccgtgctctctttaaaaatgatgagaatgataaggcagagca 15726779  T
Q  111 actt---cgtgaaatgattacgagaggcctattgtaag 145  Q
    ||||   |||||||||||| | ||||| ||||||||||    
T  15726778 acttctacgtgaaatgattgctagaggtctattgtaag 15726741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 25451424 - 25451587
Alignment:
Q  1 ttgactttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgata 100  Q
    ||||| ||| ||||||| ||||||||||| ||||||||||||||| | ||||||||| ||| ||| ||| |||| ||  ||||||||| |||||| ||||    
T  25451424 ttgacattgctgtcaaatatgaaagacaacagttgcattccagacaccgtaacttataaaacaattatcagttctcttcttgataaaggtgaaaaggata 25451523  T
Q  101 aggcggagaaacttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatg 164  Q
    ||||   ||||||| ||||| ||||| |||| ||  || | ||||| || || |||||||||||    
T  25451524 aggcaaggaaactttgtgaattgattgcgagcggtgtactataagagtgtaattaggtaagatg 25451587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 24889935 - 24889775
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| ||||||||||| | |||  |||||||||| || | || | ||| ||||| || |||||||||||||| | ||| |||||    
T  24889935 tgtcaaaaatggaagacaatggttgcattccaaatgctaaaacttatgaactagttattctttctctgttcgaaaaagatgaaaatgacacggcagagaa 24889836  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgtttt 168  Q
    |   |||||||||||||||  |||||| ||| ||||| | | ||||||||||||| |||||    
T  24889835 acttcttcgtgaaatgattgtgagagggctactgtaaaattaaaactaggtaagaggtttt 24889775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 30059981 - 30059831
Alignment:
Q  13 tcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaaac 112  Q
    ||||||||||| ||||||| ||||  |||| | ||||| |||||   |||||| || ||||| |||||||||||| |||| |||||||||||||||| ||    
T  30059981 tcaaaaatgaaggacaataattgctatccaaatgctgtgacttacagaataattatacgttctctgtttgataaaaatgataatgataaggcggagagac 30059882  T
Q  113 ttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagat 163  Q
    || |||||||||||  ||| ||  ||||||||||    |||||||||||||    
T  30059881 tttgtgaaatgattgtgagtggtgtattgtaagatcagaactaggtaagat 30059831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 29890119 - 29890203
Alignment:
Q  117 tgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatattt 202  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||| ||   ||||||||||||| |||||||||    
T  29890119 tgaaatgattacgagagacttattgtaaaactgaaactaggtaagatgtttt-ctatttatctattgttatattgtatttatattt 29890203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 29357666 - 29357564
Alignment:
Q  13 tcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaaac 112  Q
    ||||||||| |||||||| | ||||||||| | |||  ||||||||||||||| |||| ||| |||||  | |||||||||||||| | ||| |||||||    
T  29357666 tcaaaaatggaagacaatggctgcattccaaatgctaaaacttatgaaataattatcctttctctgttcaaaaaagatgaaaatgagatggcagagaaac 29357567  T
Q  113 ttc 115  Q
    |||    
T  29357566 ttc 29357564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 29930380 - 29930495
Alignment:
Q  13 tcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaaa- 111  Q
    ||||||||| | |||||| | ||||||||| | |||  ||||||||||||||| |||| ||| || |||||  ||||||||||||||| ||| ||||||     
T  29930380 tcaaaaatggacgacaatggctgcattccaaatgctaaaacttatgaaataattatcccttcactatttgaagaagatgaaaatgatatggcagagaaat 29930479  T
Q  112 --cttcgtgaaatgat 125  Q
      ||||||||||||||    
T  29930480 ttcttcgtgaaatgat 29930495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 29946747 - 29946831
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaa 95  Q
    |||||||||||||| |  |||| |||||||||||| ||| |||||||| || ||| |||| |||  |||||||||||| ||||||    
T  29946747 tgtcaaaaatgaaataatatagctgcattccagacactgcaacttatggaacaattatccattctttgtttgataaaggtgaaaa 29946831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 29211082 - 29210978
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||| ||| | ||||||||||| |||  |||||||||| |||| |  | ||| |||||  | |||| ||||||||||| ||| |||||    
T  29211082 tgtcaaaaatggaagagaatggatgcattccagatgctaaaacttatgaattaattaagctttctctgttcaaaaaaggtgaaaatgatatggcagagaa 29210983  T
Q  111 acttc 115  Q
    |||||    
T  29210982 acttc 29210978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 4444 - 4640
Alignment:
Q  8 tgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcgga 107  Q
    |||||||||||||| |||| ||| ||||||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4444 tgttgtcaaaaatggaagaaaatggttgcattccaaacgccgttacttatgaaataatcatccgttctctgtttgataaagatgaaaatgataaggcgga 4543  T
Q  108 gaaa---cttcgtgaaatgattacgagaggcctattgtaagactgaaactaggtaagatgttttgctatataaacattgttatattgtttttatattt 202  Q
    ||||   |||| |||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||| ||   |||||||||| || |||||||||    
T  4544 gaaacttcttcttgaaatgattacgagagggctattgtaagattgaaactaggtatgatgtttt-ctatttatctattgttatatggtatttatattt 4640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 22653 - 22800
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||| ||| | ||||||||||| |||  ||||||||||||||| |||| ||| ||||| || |||||||||||||||| ||| |||||    
T  22653 tgtcaaaaatggaagagaatggatgcattccagatgctaaaacttatgaaataattatcctttctctgttcgaaaaagatgaaaatgatatggcagagaa 22752  T
Q  111 a---cttcgtgaaatgattacgagaggcctattgtaagactgaaacta 155  Q
    |   |||||||||||||| | | |||| ||||||||||| ||||||||    
T  22753 acttcttcgtgaaatgatcatgcgaggtctattgtaagattgaaacta 22800  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 24208867 - 24208754
Alignment:
Q  13 tcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaaac 112  Q
    ||||||||||||| || | ||||||||||||| |||  ||||| ||||||||| |||| |||  |||||||||||| |||| ||||||||||  ||||||    
T  24208867 tcaaaaatgaaagccagtggttgcattccagatgctaaaacttttgaaataattatccattctttgtttgataaaggtgaatatgataaggcaaagaaac 24208768  T
Q  113 ttcgtgaaatgatt 126  Q
    ||||||||||||||    
T  24208767 ttcgtgaaatgatt 24208754  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 11991618 - 11991726
Alignment:
Q  7 ttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcgg 106  Q
    ||||||||||||||| | |||||| ||  |||||| || ||||||||||||||||   ||||||   | || ||| |||||||||| ||||| |||||||    
T  11991618 ttgttgtcaaaaatggatgacaatggtatcattcctgatgctgtaacttatgaaactctcatccaggctctctttcataaagatgagaatgaaaaggcgg 11991717  T
Q  107 agaaacttc 115  Q
    |||||||||    
T  11991718 agaaacttc 11991726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 10130441 - 10130585
Alignment:
Q  5 ctttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggc 104  Q
    ||||| |||||||||||||||||||| | ||||| ||| | |||  ||||||||||||||| || | |||  ||||  | |||||||||||||||| |||    
T  10130441 ctttgctgtcaaaaatgaaagacaatgggtgcatgccaaatgctaaaacttatgaaataattattctttctttgttcaaaaaagatgaaaatgatatggc 10130540  T
Q  105 ggagaaa---cttcgtgaaatgattacgagaggcctattgtaaga 146  Q
    ||| |||   |||||||| ||||||| ||||||||||||||||||    
T  10130541 ggaaaaacttcttcgtgagatgattaggagaggcctattgtaaga 10130585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 19490550 - 19490692
Alignment:
Q  1 ttgactttgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgata 100  Q
    ||||| ||| ||||||||||| ||| |||  | |||||||| || ||| |||||||||||||||| || ||| | || ||||  |||| ||  |||||||    
T  19490550 ttgaccttgctgtcaaaaatggaagccaaaggctgcattcctgatgctataacttatgaaataattattcgtgctctctttggaaaaggtgtgaatgata 19490649  T
Q  101 aggcggagaaa---cttcgtgaaatgattacgagaggcctatt 140  Q
    |||| || |||   ||||||||||||||| | ||||| |||||    
T  19490650 aggctgaaaaacttcttcgtgaaatgattgccagaggtctatt 19490692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 53305 - 53181
Alignment:
Q  34 tgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaaacttc---gtgaaatgattacga 130  Q
    ||||||||| | |||  ||||||||||||||| ||||  || ||||| || |||||||||||||||| ||| ||||||||||   ||||||||||  ||     
T  53305 tgcattccaaatgctaaaacttatgaaataattatcctgtctctgttcgaaaaagatgaaaatgatatggcagagaaacttctttgtgaaatgatcgcgt 53206  T
Q  131 gaggcctattgtaagactgaaacta 155  Q
    |||| ||||||||||||||||||||    
T  53205 gaggtctattgtaagactgaaacta 53181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 15062565 - 15062461
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    |||||||||||||||||||| ||||||||||  | ||| ||||||| |||||| | || | ||| || ||||| ||||||||||||||||| || |||||    
T  15062565 tgtcaaaaatgaaagacaatggttgcattcctaatgctataacttacgaaatacttattcattctctctttgaaaaagatgaaaatgataaagcagagaa 15062466  T
Q  111 acttc 115  Q
    |||||    
T  15062465 acttc 15062461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 980 - 880
Alignment:
Q  15 aaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaaactt 114  Q
    ||||||| |||||||| ||||||||||| | ||||||||||||| || ||| |||| | | || ||| | || ||||| ||||||||||| |||||||||    
T  980 aaaaatggaagacaatggttgcattccaaatgctgtaacttatgcaacaattatccatgctctctttaaaaatgatgagaatgataaggcagagaaactt 881  T
Q  115 c 115  Q
    |    
T  880 c 880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 125812 - 125708
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    ||||||||||| |||||||| |    ||||| || ||||||||||||||||  ||||||||  |  | ||| |||||||||| ||||| |||||||||||    
T  125812 tgtcaaaaatggaagacaatggcataattcctgatgctgtaacttatgaaactatcatccgggctttctttcataaagatgagaatgaaaaggcggagaa 125713  T
Q  111 acttc 115  Q
    |||||    
T  125712 acttc 125708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 137721 - 137839
Alignment:
Q  48 tgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaaa---cttcgtgaaatgattacgagaggcctattgtaa 144  Q
    ||||||||||||||  || ||||| || || ||| |||||||| | ||||| ||||||||||||   |||||||||||| || | ||||| |||||||||    
T  137721 tgtaacttatgaaactattatccgctctctcttttataaagattacaatgaaaaggcggagaaacttcttcgtgaaatggttgctagaggtctattgtaa 137820  T
Q  145 gactgaaactaggtaagat 163  Q
    || | |  |||||||||||    
T  137821 gatttactctaggtaagat 137839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 140570 - 140674
Alignment:
Q  11 tgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataatcatccgttccctgtttgataaagatgaaaatgataaggcggagaa 110  Q
    |||| |||||| | |||||| ||  |||||| || ||||||||||||| ||  ||||||||  | || ||| |||||||||| |||||  ||||||||||    
T  140570 tgtctaaaatggatgacaatggtatcattcctgatgctgtaacttatgtaactatcatccgggctctctttcataaagatgagaatgaacaggcggagaa 140669  T
Q  111 acttc 115  Q
    |||||    
T  140670 acttc 140674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 9302 - 9359
Alignment:
Q  8 tgttgtcaaaaatgaaagacaatagttgcattccagacgctgtaacttatgaaataat 65  Q
    |||||||||||||| |||||||| ||||||||||  | ||||||||||  ||||||||    
T  9302 tgttgtcaaaaatggaagacaatggttgcattcctaatgctgtaactttcgaaataat 9359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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