View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_low_4 (Length: 586)
Name: NF11500_low_4
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_4 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 41186340 - 41186723
Alignment:
| Q |
19 |
agtatagacaatattttagatccgtatcaaaattaaatgtgttggacattaatagtttgagttcttttggtattttctgttttcatttttgttcattaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41186340 |
agtatagacaatattttagatccgtatcaaa-ttaaatgtgttggacattaatagtttgagttcttttggtattttctgttttcatttttgttcattaga |
41186438 |
T |
|
| Q |
119 |
taaatattagaaaatgcattgtataggaataagaagaagaaaaactaaagcctaatgaaggttgcccctaaacatcaaatatgtaagacaaggcggagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41186439 |
taaatattagaaaatgcattgtataggaataagaagaaaaaaaactaaagcctaatgaaggttgcccctaaacatcaaatatgtaagacaaggcggagga |
41186538 |
T |
|
| Q |
219 |
aagcaagggagggaagaaatctattttctttaaatcttagattggagtag-ttcaaatttagtcaaccaatcaacctaactctcaagatattcatttaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41186539 |
aagcaagggagggaagaaatctattttctttaaatcttagattgaagtagcttcaaatttagtcaaccaatcaacctaactctcaagatattcatttaca |
41186638 |
T |
|
| Q |
318 |
acaagccccactcaagctatttgaaatgcatatgtttaaccaaagaagcatatggatgaatataaggaacctcattttggtcaac |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41186639 |
acaagccccactcaagctatttgaaatgcatatgtttaaccaaagaagcatatggatgaatataaggaacctcattttggtcaac |
41186723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 400 - 569
Target Start/End: Original strand, 41186750 - 41186918
Alignment:
| Q |
400 |
aacaccttttttgtctcttatctttatatcagagttcatattggtcccttatttaaaaaaggtgcatatgggtcctctaatttgtttaattcgtaccata |
499 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41186750 |
aacacctttttt-tcccttatctttatatcagagttcatattggtcccttatttaaaaaaggtgtatatgggtcctctaatttgtttaattcgtaccata |
41186848 |
T |
|
| Q |
500 |
tcagtaatttctatccatcaaaggctaacagcgttaattgtactatatgtgacatgtaagtcatcatctc |
569 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41186849 |
tcagtaatttctatccatcaaaggctaacggcgttaattgtactatatgtgacatgtaagtcatcatctc |
41186918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 528
Target Start/End: Complemental strand, 51691471 - 51691376
Alignment:
| Q |
433 |
gttcatattggtcccttatttaaaaaaggtgcatatgggtcctctaatttgtttaattcgtaccatatcagtaatttctatccatcaaaggctaac |
528 |
Q |
| |
|
||||||||| |||| |||||| ||||| ||||| || ||||| |||||||||||||| ||| ||||| ||| ||||| ||| |||||||||||| |
|
|
| T |
51691471 |
gttcatatttgtccattatttgaaaaaagtgcagatatgtcctttaatttgtttaattggtatcatattagttatttccatcgttcaaaggctaac |
51691376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 400 - 560
Target Start/End: Original strand, 85079 - 85240
Alignment:
| Q |
400 |
aacaccttttttgtctcttatctttatatcagagttcatattggtcccttatttaaaaaa-ggtgcatatgggtcctctaatttgtttaattcgtaccat |
498 |
Q |
| |
|
||||||||||| ||||||||||||||| || | ||| |||||||||||||||| |||||| |||| | || ||| |||||||||||||| ||||||| |
|
|
| T |
85079 |
aacacctttttggtctcttatctttatttcggggtttatattggtcccttattaaaaaaaaggtgtagataaaccctttaatttgtttaattggtaccat |
85178 |
T |
|
| Q |
499 |
atcagtaatttctatccatcaaaggctaacagcgttaattgtactatatgtgacatgtaagt |
560 |
Q |
| |
|
|| | | |||| ||||||||||| ||||| | |||| ||| |||||||| ||||||||| |
|
|
| T |
85179 |
attaatcattttcatccatcaaagactaacgacattaaccgtagtatatgtggcatgtaagt |
85240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 527
Target Start/End: Complemental strand, 29529683 - 29529555
Alignment:
| Q |
400 |
aacaccttttttgtctcttatctttatatcagagttcatattggtcccttatttaaaa-aaggtgcatatgggtcctctaatttgtttaattcgtaccat |
498 |
Q |
| |
|
||||||||||| ||| ||||||||||| | | ||||||||||||||||||||||||| || ||||| || |||||| |||||||||| ||| ||||| |
|
|
| T |
29529683 |
aacacctttttggtcccttatctttattttggtgttcatattggtcccttatttaaaagaaagtgcaaataggtcctttaatttgtttcattggtaccgc |
29529584 |
T |
|
| Q |
499 |
atcagtaatttctatccatcaaaggctaa |
527 |
Q |
| |
|
|| ||| |||| ||||||||||| |||| |
|
|
| T |
29529583 |
attagtcattttcatccatcaaagactaa |
29529555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 29529054 - 29529111
Alignment:
| Q |
400 |
aacaccttttttgtctcttatctttatatcagagttcatattggtcccttatttaaaa |
457 |
Q |
| |
|
||||||||||| ||| ||||||||||| || | ||||||||||||||||||| |||| |
|
|
| T |
29529054 |
aacacctttttggtcccttatctttatttcgggattcatattggtcccttattaaaaa |
29529111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 536
Target Start/End: Original strand, 12313909 - 12314009
Alignment:
| Q |
437 |
atattggtcccttatttaaa-aaaggtgcatatgggtcctctaatttgtttaattcgtaccatatcagtaatttctatccatcaaaggctaacagcgtta |
535 |
Q |
| |
|
||||||||||||| |||||| ||||||||| || | |||| |||||||||||||| ||| |||| ||| |||| |||||||||||||||| | ||||| |
|
|
| T |
12313909 |
atattggtcccttgtttaaagaaaggtgcaaattgatcctttaatttgtttaattggtattatattagtcattttcatccatcaaaggctaagaacgtta |
12314008 |
T |
|
| Q |
536 |
a |
536 |
Q |
| |
|
| |
|
|
| T |
12314009 |
a |
12314009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 453
Target Start/End: Complemental strand, 7180554 - 7180507
Alignment:
| Q |
406 |
ttttttgtctcttatctttatatcagagttcatattggtcccttattt |
453 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
7180554 |
tttttggtctcttatctttatttcagtgttcatattggtccattattt |
7180507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 459
Target Start/End: Original strand, 7346887 - 7346946
Alignment:
| Q |
400 |
aacaccttttttgtctcttatctttatatcagagttcatattggtcccttatttaaaaaa |
459 |
Q |
| |
|
|||| |||||| ||| ||||||||||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
7346887 |
aacatctttttggtcccttatctttattttagagttcatattggtcccttattaaaaaaa |
7346946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 459
Target Start/End: Original strand, 7346538 - 7346597
Alignment:
| Q |
400 |
aacaccttttttgtctcttatctttatatcagagttcatattggtcccttatttaaaaaa |
459 |
Q |
| |
|
|||| |||||| ||| ||||||||||| | ||||||||||||| ||||||||| |||||| |
|
|
| T |
7346538 |
aacatctttttggtcccttatctttattttagagttcatattgatcccttattaaaaaaa |
7346597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University