View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_41 (Length: 255)
Name: NF11500_low_41
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_41 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 31924412 - 31924648
Alignment:
| Q |
19 |
gaaattgacacgttgacaccgatgataatttaagaaaatagaacaattgaatataatcacatgtgtcatagaatcggatcactgtttatcgctttcaatg |
118 |
Q |
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| T |
31924412 |
gaaattgacacgttgacaccgataataatttaagaaaatagaacaattgaatataatcacatgtgtcatagaatcggatcactgtttatagctttcaatg |
31924511 |
T |
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| Q |
119 |
tgaagtgcggtgttacatagaatcggatcctattgaaggatccacaatatgaacagtcaataatcatggttaaacatttttgtactatcagatagcaaga |
218 |
Q |
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| T |
31924512 |
tgaagtgcggtgttacatagaatcggatcctattgaaggatccacaatatgaacagtcaataatcatggttaaacatttttgtactatcagatagcaaga |
31924611 |
T |
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| Q |
219 |
gggaagcaattgatttgttactcaaagcatcagggta |
255 |
Q |
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| T |
31924612 |
gggaagcaattgatttgttactcaaagcatcagggta |
31924648 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 26462712 - 26462652
Alignment:
| Q |
25 |
gacacgttgacaccgatgataatttaagaaaatagaacaattgaatataatcacatgtgtc |
85 |
Q |
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| T |
26462712 |
gacacgtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgtc |
26462652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 16809018 - 16808956
Alignment:
| Q |
24 |
tgacacgttgacaccgatgataatttaagaaaatagaacaattgaatataatcacatgtgtca |
86 |
Q |
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| T |
16809018 |
tgacacatcgacaccggtaataatttaagaaaatagaataattaaatataatcatacgtgtca |
16808956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 27424811 - 27424770
Alignment:
| Q |
43 |
ataatttaagaaaatagaacaattgaatataatcacatgtgt |
84 |
Q |
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| T |
27424811 |
ataatttaagaaaatagaatgattgaatataataacatgtgt |
27424770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 4323937 - 4323900
Alignment:
| Q |
24 |
tgacacgttgacaccgatgataatttaagaaaatagaa |
61 |
Q |
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| T |
4323937 |
tgacacgttgacaacgataataatttaagaaaatagaa |
4323900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 10038485 - 10038452
Alignment:
| Q |
51 |
agaaaatagaacaattgaatataatcacatgtgt |
84 |
Q |
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| T |
10038485 |
agaaaatagaataattgaatataatcacatgtgt |
10038452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 27777287 - 27777251
Alignment:
| Q |
48 |
ttaagaaaatagaacaattgaatataatcacatgtgt |
84 |
Q |
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|||| |||||| ||||||||||||||||||||||||| |
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| T |
27777287 |
ttaacaaaataaaacaattgaatataatcacatgtgt |
27777251 |
T |
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