View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_46 (Length: 241)
Name: NF11500_low_46
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 53842918 - 53843071
Alignment:
| Q |
1 |
tgaaatatatgtgaggggactaatcatgaaacagaagtgtttt-ggtggggagttggtataagaagaatatatagcgtaatgagaaagtttgaaagataa |
99 |
Q |
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| T |
53842918 |
tgaaatatatgtgaggtgacgaatcatgaaacagaagtgtttttggtggggagttggtataagaagaatatatagcgtaatgagaaagtttgaaagataa |
53843017 |
T |
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| Q |
100 |
catttgagacggaattgaacgatgggtgaaaagtaaaaaacagagtttctctgt |
153 |
Q |
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| T |
53843018 |
catttgagacgaaattgaacgatgggtgaaaagtaaaaaacagagtttctctgt |
53843071 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 6849017 - 6849068
Alignment:
| Q |
177 |
ggtcaagtgattcacaccctagttcaaagtaaagctgccgctacaacattaa |
228 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
6849017 |
ggtcaagtgattcacactccagttcaaagtaaagctgccgctacaacattaa |
6849068 |
T |
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