View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_47 (Length: 240)
Name: NF11500_low_47
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 10012535 - 10012299
Alignment:
| Q |
1 |
ctgttcaaaattcaaaatataaaggagtaaagtaagggagaagaaacaatcttcttatcaaaatctaaattcaaaaagtaggtacacaatcaaatcctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012535 |
ctgttcaaaattcaaaatataaaggagtaaagtaagggagaagaaacaatcttcttatcaaaatctaaattcaaaaagtaggtacacaatcaaatcctaa |
10012436 |
T |
|
| Q |
101 |
agaactaatcataattcctaaaatacttctacaccgtcgagaatttcaaaattagctaggaatggtcttttggtcaggatattcatatttgcctcttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012435 |
agaactaatcataattcctaaaatacttctacaccgtcgagaatttcaaaattagctaggaatggtcttttggtcaggatattcatatttgcctcttgtt |
10012336 |
T |
|
| Q |
201 |
gtacagttggaataaatggcatgcaagtagcttcatc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
10012335 |
gtacagttggaataaatggcatgcaagtagcttcatc |
10012299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 52652721 - 52652957
Alignment:
| Q |
1 |
ctgttcaaaattcaaaatataaaggagtaaagtaagggagaagaaacaatcttcttatcaaaatctaaattcaaaaagtaggtacacaatcaaatcctaa |
100 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52652721 |
ctgttaaaaattgaaaatataaaggagtaaagtaagggagaagaaacaatcttcttatcaaaatctaaattcaaaaagtaggtacacaatcaaatcctaa |
52652820 |
T |
|
| Q |
101 |
agaactaatcataattcctaaaatacttctacaccgtcgagaatttcaaaattagctaggaatggtcttttggtcaggatattcatatttgcctcttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52652821 |
agaactaatcataattcctaaaatacttctacaccgtcgagaatttcaaaattagctaggaatggtcttttggtcaggatattcatatttgcctcttgtt |
52652920 |
T |
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| Q |
201 |
gtacagttggaataaatggcatgcaagtagcttcatc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
52652921 |
gtacagttggaataaatggcatgcaagtagcttcatc |
52652957 |
T |
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