View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_49 (Length: 238)
Name: NF11500_low_49
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 23301253 - 23301471
Alignment:
| Q |
1 |
tatttagtttcagaccccaagagagaacacaaacaccatgcttgaacttttcacgagttatcatttggttattgtgttggaacccaataatttgaatttc |
100 |
Q |
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| T |
23301253 |
tatttagtttcagaccccaagagagaacagaaacaccatgcttgaacttttcacgagttatcatttggttattgtgttggaacccaataatttgaatttc |
23301352 |
T |
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| Q |
101 |
tttccactttataagttcaaaaactttgtagttatgaatttgtactataaaagatggtaatgaaataaaataatccagtaattaatattatttagattgt |
200 |
Q |
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| T |
23301353 |
tttccactttataagttcaaaaactttgtagttatgaatttgtactataaaagatggtaatgaaataaaataatccagtaattaatattatttagattgt |
23301452 |
T |
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| Q |
201 |
ttcactttgatgtaagttg |
219 |
Q |
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||||||||||||||||||| |
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| T |
23301453 |
ttcactttgatgtaagttg |
23301471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 24198867 - 24199083
Alignment:
| Q |
1 |
tatttagtttcagaccccaagagagaacacaaacaccatgcttgaacttttcacgagttatcatttggttattgtgttggaacccaataatttgaatttc |
100 |
Q |
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| T |
24198867 |
tatttagtttcagaccccaggagaatacacaaacgccatgctcaaacttttcacgagttgtgatttgattattgtgttggaacctaataatttgaatttc |
24198966 |
T |
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| Q |
101 |
tttccactttataagttcaaaaactttgtagttatgaatttgtactataaaagatggtaatgaaataaaataatccagtaattaatattatttagattgt |
200 |
Q |
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| T |
24198967 |
tttcc-ctttataagttcaaaaactttgtagttatgaatttgtactataagagatggtaattaaataaaataatctagtaattaatattatttagattgt |
24199065 |
T |
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| Q |
201 |
ttcactttgatgtaagtt |
218 |
Q |
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| T |
24199066 |
tccactttgatgtaagtt |
24199083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 16912682 - 16912898
Alignment:
| Q |
1 |
tatttagtttcagaccccaagagagaacacaaacaccatgcttgaacttttcacgagttatcatttggttattgtgttggaacccaataatttgaatttc |
100 |
Q |
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||||||||||||||| ||| |||| |||||||| ||||||| ||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||| |
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| T |
16912682 |
tatttagtttcagacgccaggagaatacacaaacgccatgctcaaacttttcacgagttgtgatttgattattgtgttggaacctaataatttgaatttc |
16912781 |
T |
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| Q |
101 |
tttccactttataagttcaaaaactttgtagttatgaatttgtactataaaagatggtaatgaaataaaataatccagtaattaatattatttagattgt |
200 |
Q |
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| T |
16912782 |
tttcc-ctttataagttcaaaaactttgtagttatgaatttgtactataagagatggtaattaaataaaataatctagtaattaatattatttagattgt |
16912880 |
T |
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| Q |
201 |
ttcactttgatgtaagtt |
218 |
Q |
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| T |
16912881 |
tccactttgatgtaagtt |
16912898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 23321309 - 23321362
Alignment:
| Q |
61 |
tcatttggttattgtgttggaacccaataatttgaatttctttccactttataa |
114 |
Q |
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| T |
23321309 |
tcatttggttattgtattggaactcaataatttgaatttctttcctctttataa |
23321362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 28423242 - 28423144
Alignment:
| Q |
101 |
tttccactttataagttcaaaaactttgtagttatgaatttgtactataaaag-atggtaatgaaataaaataatccagtaattaatattatttagatt |
198 |
Q |
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||||| |||| ||| ||||| ||| || |||||||| |||||||| | | || |||||||||||||||||||| ||| || |||||||||||||||| |
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| T |
28423242 |
tttcctctttctaatttcaagaaccttatagttatggttttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatattatttagatt |
28423144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 38749891 - 38749937
Alignment:
| Q |
51 |
tcacgagttatcatttggttattgtgttggaacccaataatttgaat |
97 |
Q |
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| T |
38749891 |
tcacgagttatcatttagttattgtgttgacactcaataatttgaat |
38749937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 200
Target Start/End: Original strand, 31290479 - 31290629
Alignment:
| Q |
49 |
tttcacgagttatcatttggttattgtgttggaacccaataatttgaatttctttccactttataagttcaaaaactttgtagttatgaatttgtactat |
148 |
Q |
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| T |
31290479 |
tttcatgagttgtaatttagttatcgttttggcacccaataatttgaatat-ttttctcttt-taatttcaaaaacattgtagttatggttttatactct |
31290576 |
T |
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| Q |
149 |
aa-aagatggtaatgaaataaaataatccagtaattaatattatttagattgt |
200 |
Q |
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|| | ||||||||||||| |||||| ||| || |||| |||||||||||| |
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| T |
31290577 |
aatataatggtaatgaaatgaaataaggcagaaaataattatatttagattgt |
31290629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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