View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11500_low_5 (Length: 580)

Name: NF11500_low_5
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11500_low_5
NF11500_low_5
[»] chr3 (3 HSPs)
chr3 (10-543)||(32193151-32193684)
chr3 (280-534)||(32248922-32249176)
chr3 (280-433)||(38209162-38209315)
[»] chr7 (3 HSPs)
chr7 (280-543)||(8843462-8843725)
chr7 (158-283)||(8807187-8807312)
chr7 (227-283)||(8843380-8843436)
[»] chr1 (1 HSPs)
chr1 (285-543)||(36376279-36376537)
[»] chr5 (1 HSPs)
chr5 (281-541)||(35958421-35958681)


Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 10 - 543
Target Start/End: Complemental strand, 32193684 - 32193151
Alignment:
Q  10 agagaagaacagaaatttctacacagattatccacacccacattcttaatcctcactccatttatacctatagcaataaaaacctttgagttttgtacta 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32193684 agagaagaacagaaatttctacacaaattatccacacccacattcttaatcctcactccatttatacctatagcaataaaaacctttgagctttgtacta 32193585  T
Q  110 ggaatctgatgcttcgtcccctttctcactttatgtaattgcagctcatgcctaacagattgtggctcctgcattaccagttctgatccttctagaatgc 209  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32193584 ggaatccgatgcttcgtcccctttctcactttatgtaattgcagctcatgcctaacagattgtggctcctgcattaccagttctgatctttctagaatgc 32193485  T
Q  210 cttgatgtccaactccctctagaagtccttgttgtgcttctgtttgacatggcatattccttacagaagcctttagacttatcctcttcaactatctccc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32193484 cttgatgtccaactccctctagaagtccttgttgtgcttctgtttgacgtggcatattccttacagaagcctttagacttatcctcttcaactatctccc 32193385  T
Q  310 taagtatataatcttcaatcttctcagcttgccatttagaaggatcttccacaaactcctcactaaaaatcattcaaaaaatacattctttccaagtagt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32193384 taagtatataatcttcaatcttctcagcttgccatttagaaggatcttccacaaactcctcactaaaaatcattcaaaaaatacattctttccaagtagt 32193285  T
Q  410 tcttctatacttatcttcatccatcaacccggtcgtcaataattcaaacacataaatcactttatgctggcccgggcgaaaaacccgtgcattagcttgc 509  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32193284 tcttctatacttatcttcatccatcaacccggtcgtcaataattgaaacacataaatcactttatgctggcccgggcgaaaaacccgtgcattagcttgc 32193185  T
Q  510 tttgttttcgaaaggttccactcagtatccaaaa 543  Q
    ||||||||||||||||||||||||||||||||||    
T  32193184 tttgttttcgaaaggttccactcagtatccaaaa 32193151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 280 - 534
Target Start/End: Original strand, 32248922 - 32249176
Alignment:
Q  280 ctttagacttatcctcttcaactatctccctaagtatataatcttcaatcttctcagcttgccatttagaaggatcttccacaaactcctcactaaaaat 379  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32248922 ctttagacttatcctcttcaaccatctccctaagtatatcatcttcaatcttctctgcttgccatttagaaggatcttccacaaactcctcactaaaaat 32249021  T
Q  380 cattcaaaaaatacattctttccaagtagttcttctatacttatcttcatccatcaacccggtcgtcaataattcaaacacataaatcactttatgctgg 479  Q
    ||| ||| |||  || |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | | ||||||||| || ||| |||||     
T  32249022 catgcaagaaacccactctttccaagtagttcttctatacttatcttcttccatcgacccggtcgtcaataactgatacacataaaccattttctgctgc 32249121  T
Q  480 cccgggcgaaaaacccgtgcattagcttgctttgttttcgaaaggttccactcag 534  Q
    ||||| |||||| | |||||| |||||||||||||||| ||| | ||||| ||||    
T  32249122 cccggtcgaaaagcgcgtgcaatagcttgctttgtttttgaaggattccattcag 32249176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 280 - 433
Target Start/End: Complemental strand, 38209315 - 38209162
Alignment:
Q  280 ctttagacttatcctcttcaactatctccctaagtatataatcttcaatcttctcagcttgccatttagaaggatcttccacaaactcctcactaaaaat 379  Q
    |||||||||||| ||||||||| || ||||||||||||| ||||||| |||||||||||| | ||||||||||||| |  |||| |||| ||||||||||    
T  38209315 ctttagacttattctcttcaaccatatccctaagtatatcatcttcattcttctcagctttctatttagaaggatccttaacaacctccgcactaaaaat 38209216  T
Q  380 cattcaaaaaatacattctttccaagtagttcttctatacttatcttcatccat 433  Q
    ||| ||| |||  ||  ||| ||||||||||||||||||||||||||| |||||    
T  38209215 catgcaagaaacgcacgcttcccaagtagttcttctatacttatcttcctccat 38209162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 280 - 543
Target Start/End: Original strand, 8843462 - 8843725
Alignment:
Q  280 ctttagacttatcctcttcaactatctccctaagtatataatcttcaatcttctcagcttgccatttagaaggatcttccacaaactcctcactaaaaat 379  Q
    |||||||||||||||||||||| |||||||||||||| | |||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  8843462 ctttagacttatcctcttcaaccatctccctaagtatttcatcttcaatcttttctgcttgccatttagatggatcttccacaaactcctcactaaaaat 8843561  T
Q  380 cattcaaaaaatacattctttccaagtagttcttctatacttatcttcatccatcaacccggtcgtcaataattcaaacacataaatcactttatgctgg 479  Q
    ||| | | |||  || |||||||| |||||| ||||| |||||||||| |||||  |||| ||||| ||||| | | |||| |||| || ||| |||||     
T  8843562 catgctagaaacccactctttccaggtagtttttctaaacttatcttcctccattgacccagtcgttaataactgatacacgtaaaccattttctgctga 8843661  T
Q  480 cccgggcgaaaaacccgtgcattagcttgctttgttttcgaaaggttccactcagtatccaaaa 543  Q
    || || |||||| | |||||| |||||||||||||||| ||| | ||||| |||| ||||||||    
T  8843662 ccaggacgaaaagcgcgtgcaatagcttgctttgtttttgaaggattccattcagaatccaaaa 8843725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 8807187 - 8807312
Alignment:
Q  158 tgcctaacagattgtggctcctgcattaccagttctgatccttctagaatgccttgatgtccaactccctctagaagtccttgttgtgcttctgtttgac 257  Q
    ||||||||||||||||| |  ||||| ||||  | |||||||||||||| |||||| |||||||||||||||| ||   |||||||| ||||||| ||||    
T  8807187 tgcctaacagattgtggattttgcataaccaaatatgatccttctagaaggccttgctgtccaactccctctacaaagtcttgttgtccttctgtatgac 8807286  T
Q  258 atggcatattccttacagaagccttt 283  Q
    | | ||||||||||||| || |||||    
T  8807287 acgacatattccttacaaaatccttt 8807312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 8843380 - 8843436
Alignment:
Q  227 tctagaagtccttgttgtgcttctgtttgacatggcatattccttacagaagccttt 283  Q
    |||||||| ||||| ||| ||||||| |||| ||||||||||||||||||| |||||    
T  8843380 tctagaaggccttgctgtccttctgtatgacgtggcatattccttacagaatccttt 8843436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 285 - 543
Target Start/End: Complemental strand, 36376537 - 36376279
Alignment:
Q  285 gacttatcctcttcaactatctccctaagtatataatcttcaatcttctcagcttgccatttagaaggatcttccacaaactcctcactaaaaatcattc 384  Q
    ||||| ||||||||||| ||||| || ||||| | ||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||| |||||||| |    
T  36376537 gacttgtcctcttcaaccatctctctgagtatgtcatcttcaattttctcagcttgccatttggaaggatcttcaacaagctcctcactgaaaatcatac 36376438  T
Q  385 aaaaaatacattctttccaagtagttcttctatacttatcttcatccatcaacccggtcgtcaataattcaaacacataaatcactttatgctggcccgg 484  Q
    || |||  || |||||||||||||||||||| ||||||||||| |||||  | || ||| |||| || | | ||||||||| || ||| | ||| || ||    
T  36376437 aagaaacccactctttccaagtagttcttctgtacttatcttcctccatggatccagtcatcaacaagtgatacacataaaccattttctcctgaccagg 36376338  T
Q  485 gcgaaaaacccgtgcattagcttgctttgttttcgaaaggttccactcagtatccaaaa 543  Q
     |||||| | |||||| |||||||||||||||| ||| | |||||||||| ||||||||    
T  36376337 tcgaaaagcgcgtgcaatagcttgctttgtttttgaaggattccactcagaatccaaaa 36376279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 281 - 541
Target Start/End: Original strand, 35958421 - 35958681
Alignment:
Q  281 tttagacttatcctcttcaactatctccctaagtatataatcttcaatcttctcagcttgccatttagaaggatcttccacaaactcctcactaaaaatc 380  Q
    ||||||||||||||| || || || ||||| || |||| ||||||||||||||||||||||||   |||||||||||| |||||  |||| || ||||||    
T  35958421 tttagacttatcctcctcgaccatttcccttagaatatcatcttcaatcttctcagcttgccaacgagaaggatcttcgacaaatgcctcgctgaaaatc 35958520  T
Q  381 attcaaaaaatacattctttccaagtagttcttctatacttatcttcatccatcaacccggtcgtcaataattcaaacacataaatcactttatgctggc 480  Q
    || |   | |  || ||||||||||| |||||||  ||||||||||| |||| | | || |||  ||| |  | | | ||||||| || ||| ||||| |    
T  35958521 atgctcgacacccactctttccaagtggttcttcggtacttatcttcctccaacgaacctgtcaccaagagctgataaacataaaccattttctgctgac 35958620  T
Q  481 ccgggcgaaaaacccgtgcattagcttgctttgttttcgaaaggttccactcagtatccaa 541  Q
    | ||||||||  | || ||| |||||||||||||||| ||| |||||||||| | ||||||    
T  35958621 cggggcgaaacgctcgcgcaatagcttgctttgttttagaagggttccactctgaatccaa 35958681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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