View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_51 (Length: 236)
Name: NF11500_low_51
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 53842645 - 53842874
Alignment:
| Q |
1 |
agcgtttaaagttggtgcatggaaaaagaagaatatgataaaagaaaaaagaggaattatcaacacaaggatacgccaattaatatcagaaaaccgttta |
100 |
Q |
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| T |
53842645 |
agcgtttaaagttggtgcatggaaaaagaagaatatgataaaagaaaaaagaggaattatcaacacaaggatacgccaattaatatcagaaaaccgttta |
53842744 |
T |
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| Q |
101 |
gtaaatggatacattgattttgtaggactctttatcatcttcaacgctgtttgttatgtttgtttgattttgtttattcacaaaaccttggggttgaggg |
200 |
Q |
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| T |
53842745 |
gtaaatggatacattgattttgtaggactctttatcatcttcaacgctgtttgttatgtttgtttgattttgtttattcacaaaaccttggggttgaggg |
53842844 |
T |
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| Q |
201 |
tattagatttttgttttctggaaaggtaaa |
230 |
Q |
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| T |
53842845 |
tattagatttttgttttctggaaaggtaaa |
53842874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 53844348 - 53844557
Alignment:
| Q |
4 |
gtttaaagttggtgcatggaaaaagaagaatatgataaaagaaaaaagaggaattatcaacacaaggatacgccaattaatatcagaaaaccgtttagta |
103 |
Q |
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| T |
53844348 |
gtttatagtgggtgcatggaaagagaagaatatgataatagaaagtagagggattatcaacataacgagaccccaattaatatcagaaaaccatttatta |
53844447 |
T |
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| Q |
104 |
aatggatacattgattttgtaggactctttatcatcttcaacgctgtttgttatgtttg-tttgattttgtttattcacaaaaccttggggttgagggta |
202 |
Q |
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| T |
53844448 |
attggactcgttagtttttttggactctttaccatctccaaggtagt------tgtttgatttatttttcttctttcacaaaaccttgaggttgagggta |
53844541 |
T |
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| Q |
203 |
ttagatttttgttttc |
218 |
Q |
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| T |
53844542 |
ttagatttttgttttc |
53844557 |
T |
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Back To:
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