View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_53 (Length: 233)
Name: NF11500_low_53
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10012794 - 10013016
Alignment:
| Q |
1 |
ccaattgttccagttgttcacgcaaagtagcaacatactgcagagtcaacaaattagtaagcttttcttttcaagagttaatcaaatgattaaaccaata |
100 |
Q |
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| T |
10012794 |
ccaattgttccagttgttcacgcaaagtagcaacatactgcagagtcaacaaattagtaagcttttcttttcaagagttaatcaaatgattaaatcaata |
10012893 |
T |
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| Q |
101 |
gaacattacttaataaattatagtcactagagaccacataaacctaaaataaggcaacttggtgctataaagaaactgccgtaatggggtcgacaatcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10012894 |
gaacattacttaataaattatagtcactagagaccacataaacctaaaataaggcaacttggtgctataaagaaactgccgtaatggggtcgaaaatcaa |
10012993 |
T |
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| Q |
201 |
agggtcgagtctattttggatat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
10012994 |
agggtcgagtctattttggatat |
10013016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 52652458 - 52652255
Alignment:
| Q |
1 |
ccaattgttccagttgttcacgcaaagtagcaacatactgcagagtcaacaaattagtaagcttttcttttcaagagttaatcaaatgattaaac-caat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
52652458 |
ccaattgttccagttgttcacgcaaagtagcaacatactgcagagtca----------------ttcttttcaagagttaatcaaatgattaaattcaat |
52652375 |
T |
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| Q |
100 |
agaacattacttaataaattatagtcactagagacca-cataaacctaaaataaggcaacttggtgctataaagaaactgccgtaatggggtcgacaatc |
198 |
Q |
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| T |
52652374 |
aaaa--ttagcaaataaattatagtcacttgagaccaacataaacctaaaataaggcaacttggtgctataaagaaactgccgtaatggggtcgaaattc |
52652277 |
T |
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| Q |
199 |
aaagggtcgagtctattttggat |
221 |
Q |
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||| |||| ||||||||||||| |
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| T |
52652276 |
aaa-ggtccggtctattttggat |
52652255 |
T |
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