View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11500_low_54 (Length: 232)

Name: NF11500_low_54
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11500_low_54
NF11500_low_54
[»] chr6 (40 HSPs)
chr6 (1-223)||(29894334-29894556)
chr6 (1-216)||(29366417-29366632)
chr6 (1-212)||(28926543-28926754)
chr6 (1-216)||(29073551-29073766)
chr6 (1-216)||(29078315-29078530)
chr6 (1-216)||(29106124-29106339)
chr6 (1-216)||(29348594-29348809)
chr6 (1-216)||(29835003-29835218)
chr6 (1-216)||(29866437-29866652)
chr6 (1-216)||(29905427-29905642)
chr6 (1-200)||(30118737-30118936)
chr6 (1-216)||(29357975-29358190)
chr6 (1-202)||(30060158-30060359)
chr6 (12-216)||(29099131-29099335)
chr6 (12-216)||(29116049-29116253)
chr6 (12-216)||(29084806-29085010)
chr6 (1-216)||(29897865-29898080)
chr6 (1-175)||(29887126-29887300)
chr6 (9-183)||(30127059-30127233)
chr6 (3-170)||(29946271-29946438)
chr6 (1-159)||(24890242-24890400)
chr6 (1-119)||(30061991-30062109)
chr6 (12-165)||(29889569-29889722)
chr6 (1-165)||(24730694-24730858)
chr6 (12-216)||(29929061-29929265)
chr6 (17-216)||(29882223-29882422)
chr6 (17-216)||(29909379-29909578)
chr6 (17-223)||(24263764-24263970)
chr6 (1-165)||(30999934-31000098)
chr6 (17-216)||(24271959-24272158)
chr6 (84-223)||(29903037-29903180)
chr6 (1-154)||(25450968-25451121)
chr6 (1-57)||(29211389-29211445)
chr6 (1-216)||(29876613-29876828)
chr6 (45-151)||(15727229-15727335)
chr6 (101-202)||(30154302-30154403)
chr6 (102-190)||(15715083-15715171)
chr6 (101-216)||(30053215-30053330)
chr6 (101-175)||(16702242-16702316)
chr6 (101-202)||(24934469-24934570)
[»] scaffold0573 (1 HSPs)
scaffold0573 (1-212)||(3929-4140)
[»] scaffold0054 (1 HSPs)
scaffold0054 (9-216)||(53600-53807)
[»] chr3 (4 HSPs)
chr3 (15-216)||(24219245-24219446)
chr3 (1-175)||(33997769-33997943)
chr3 (3-165)||(11991151-11991313)
chr3 (1-77)||(16350977-16351053)
[»] scaffold0237 (1 HSPs)
scaffold0237 (17-216)||(22131-22330)
[»] chr2 (1 HSPs)
chr2 (39-175)||(15062910-15063046)
[»] chr1 (5 HSPs)
chr1 (27-202)||(10129939-10130114)
chr1 (34-175)||(4260346-4260487)
chr1 (34-175)||(4263968-4264109)
chr1 (39-133)||(17251184-17251278)
chr1 (34-202)||(19490052-19490220)
[»] scaffold0308 (1 HSPs)
scaffold0308 (19-165)||(8834-8980)
[»] scaffold0572 (1 HSPs)
scaffold0572 (1-86)||(3151-3236)
[»] scaffold0177 (1 HSPs)
scaffold0177 (21-151)||(27206-27336)
[»] scaffold0014 (5 HSPs)
scaffold0014 (5-170)||(140132-140297)
scaffold0014 (1-172)||(137206-137377)
scaffold0014 (101-151)||(121567-121617)
scaffold0014 (1-77)||(104734-104810)
scaffold0014 (21-77)||(121496-121552)
[»] scaffold0654 (1 HSPs)
scaffold0654 (21-151)||(1236-1366)
[»] chr7 (1 HSPs)
chr7 (1-150)||(3642891-3643040)
[»] chr8 (1 HSPs)
chr8 (102-190)||(13904694-13904782)
[»] scaffold0051 (1 HSPs)
scaffold0051 (103-172)||(43383-43452)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-77)||(126119-126195)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29894556 - 29894334
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894556 tctcatcaactagcttcaaagcataagagattttccccaatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 29894457  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894456 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 29894357  T
Q  201 ctctgagacatagtgtataatat 223  Q
    |||||||||||||||||||||||    
T  29894356 ctctgagacatagtgtataatat 29894334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29366417 - 29366632
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||      
T  29366417 tctcatcgactagcttcaaagcataagagattttccccaatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatgttattgca 29366516  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| |||| |||| || ||||||| |||||||||||||    
T  29366517 atgcatttctttaaagagattcatggcttcatcgacctttttaatcttacaaaacccgtgaatcatgatactgtagctgtgaatattaggattcactccc 29366616  T
Q  201 ctctgagacatagtgt 216  Q
    |||||||| |||||||    
T  29366617 ctctgagatatagtgt 29366632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 28926543 - 28926754
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | | ||      
T  28926543 tctcatcgactagcttcaaagcataagagattttccccgatttacacaaaccatcgataagggaattgtaagttaccacattaggaataatttttctgca 28926642  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||| |||||||||||| ||| |||||  | ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  28926643 atgcatttcttcaaagagattcatggctgcatcggtcattttaatcttacaaaacccattaatcaagatattgtaactctgaatatcaggattcactccc 28926742  T
Q  201 ctctgagacata 212  Q
    | ||||| ||||    
T  28926743 ccctgagccata 28926754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29073766 - 29073551
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||| | ||||      
T  29073766 tctcatcgactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagagaagtgtaagtcaccacattaggaataatgtttttgca 29073667  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||| |||||||||||| ||| |||||||||||||||||    
T  29073666 atgcatttttttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcatgatattgtaactctgagtatcaggattcactccc 29073567  T
Q  201 ctctgagacatagtgt 216  Q
    | ||||| ||||||||    
T  29073566 ccctgagccatagtgt 29073551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29078530 - 29078315
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||| | ||||      
T  29078530 tctcatcgactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagagaagtgtaagtcaccacattaggaataatgtttttgca 29078431  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||| |||||||||||| ||| |||||||||||||||||    
T  29078430 atgcatttttttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcatgatattgtaactctgagtatcaggattcactccc 29078331  T
Q  201 ctctgagacatagtgt 216  Q
    | ||||| ||||||||    
T  29078330 ccctgagccatagtgt 29078315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29106339 - 29106124
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||| | ||||      
T  29106339 tctcatcgactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagagaagtgtaagtcaccacattaggaataatgtttttgca 29106240  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||| |||||||||||| ||| |||||||||||||||||    
T  29106239 atgcatttttttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcatgatattgtaactctgagtatcaggattcactccc 29106140  T
Q  201 ctctgagacatagtgt 216  Q
    | ||||| ||||||||    
T  29106139 ccctgagccatagtgt 29106124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29348594 - 29348809
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||      
T  29348594 tctcatcgactagcttcaaagcataagagattttccctgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatgtttttgca 29348693  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||| ||||||||| || |||| || || | ||||||||    
T  29348694 atgcatttctttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcatgatattgtagctctgaacattagcagtcactccc 29348793  T
Q  201 ctctgagacatagtgt 216  Q
    | ||||| ||||||||    
T  29348794 ccctgagccatagtgt 29348809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29835218 - 29835003
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||      
T  29835218 tctcatcaactagcttcaaagcataagagattttccccaatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatttttctgca 29835119  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||| |||||||||||| ||||||||   | ||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||    
T  29835118 atgcatttcttcaaagagattcatggcttcatccgtcattttaatcttacaaagcccattaatcaagatactgtaactgtgaatatcaggattcactccc 29835019  T
Q  201 ctctgagacatagtgt 216  Q
    | ||||| ||| ||||    
T  29835018 ccctgagccattgtgt 29835003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29866652 - 29866437
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||      
T  29866652 tctcatcaactagcttcaaagcataagagattttccccgatttgcacaaaccatcaataagggaattgtaagttaccacatcaggaataatttttctgca 29866553  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||| |||||||||||| ||||||||   | ||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||    
T  29866552 atgcatttcttcaaagagattcatggcttcatccgtcattttaatcttacaaagcccattaatcaagatactgtaactgtgaatatcaggattcactccc 29866453  T
Q  201 ctctgagacatagtgt 216  Q
    | ||||| ||| ||||    
T  29866452 ccctgagccattgtgt 29866437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29905642 - 29905427
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |  | | |       
T  29905642 tctcatcaactagcttcaaagcataagagatttttccagatttacacaaaccatcgataagggaattgtaagttaccacatcaggaattaattttctaca 29905543  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  29905542 atgcatttcttcaaagagatttatggcttcatcaacctttttaatcttacaaaacccattaatcaagatattgtaactttgaatagcaggattcactccc 29905443  T
Q  201 ctctgagacatagtgt 216  Q
      ||||| ||||||||    
T  29905442 tcctgagccatagtgt 29905427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 30118737 - 30118936
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |  | | |       
T  30118737 tctcatcaactagcttcaaagcataagagatttttccagatttacacaaaccatcgataagggaattgtaagttaccacatcaggaattaattttctaca 30118836  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  30118837 atgcatttcttcaaagagatttatggcttcatcgacctttttaatcttacaaaacccattaatcaagatattgtaactttgaatagcaggattcactccc 30118936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29357975 - 29358190
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||||||| ||||||||    
T  29357975 tctcatccactagcttcaaagcataagagattttccccgatttacataaaccatcaataagggaactgtaagttaccacgttaggaataatttgtttgtg 29358074  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    |||||||||||| |  || | ||| |||||||| | | ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||||    
T  29358075 atgcatttctttgagtagttccatggcttcatccatcattttaatcttacaaaacccattaatcaagatactgtaactctgaatatcaggactcactccc 29358174  T
Q  201 ctctgagacatagtgt 216  Q
      ||||| ||||||||    
T  29358175 aactgagccatagtgt 29358190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 30060158 - 30060359
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | ||||      
T  30060158 tctcatcgactagctttaaagcataagagattttccccgatttacagataccatcaataagggaattgtatgttaccacatcaggaataatgtttttgca 30060257  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||  |||||||| |||  || |||| || ||||||||    
T  30060258 atgcatttcttcaaagagattcatggcttcatcgacctttttaatcttacaaaacccattaatcattatattgtagcttgaaacatcatgagtcactccc 30060357  T
Q  201 ct 202  Q
    ||    
T  30060358 ct 30060359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 29099335 - 29099131
Alignment:
Q  12 agcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctt 111  Q
    |||| ||||||||| |||||| |||| ||||| |  |||||||||||||||||| |||||||||| |||||||||||||| | |||| ||||||||||||    
T  29099335 agctgcaaagcatatgagattctccctgatttgcttaaaccatcaataagggaactgtaagttacgacatcaggaataatgtttttgcgatgcatttctt 29099236  T
Q  112 taaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacat 211  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||| | ||||| |||| ||||||| |||||||||||||||||||||| ||||| |||    
T  29099235 taaagagattcatggcttcatcaaactttttaatcttacaaaacccgttaatcatgatactgtaactctgaatatcaggattcactcccccctgagccat 29099136  T
Q  212 agtgt 216  Q
    |||||    
T  29099135 agtgt 29099131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 29116253 - 29116049
Alignment:
Q  12 agcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctt 111  Q
    |||| ||||||||| |||||| |||| ||||| |  |||||||||||||||||| |||||||||| |||||||||||||| | |||| ||||||||||||    
T  29116253 agctgcaaagcatatgagattctccctgatttgcttaaaccatcaataagggaactgtaagttacgacatcaggaataatgtttttgcgatgcatttctt 29116154  T
Q  112 taaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacat 211  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||| | ||||| |||| ||||||| |||||||||||||||||||||| ||||| |||    
T  29116153 taaagagattcatggcttcatcaaactttttaatcttacaaaacccgttaatcatgatactgtaactctgaatatcaggattcactcccccctgagccat 29116054  T
Q  212 agtgt 216  Q
    |||||    
T  29116053 agtgt 29116049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 29085010 - 29084806
Alignment:
Q  12 agcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctt 111  Q
    |||| ||||||||| |||||| |||| ||||| |  |||||||||||||| ||||||||||| ||||||| ||||||||| | ||||  ||||||||| |    
T  29085010 agctgcaaagcatatgagattctccctgatttgcttaaaccatcaataagagaattgtaagtcaccacattaggaataatgtttttgcaatgcatttcat 29084911  T
Q  112 taaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacat 211  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| |  |||| |||    
T  29084910 taaagagattcatagctttatcgacctttttaatcttacaaaacccattaatcaagatattgtaactgcgaatatcaggattcactccgccttgagccat 29084811  T
Q  212 agtgt 216  Q
    |||||    
T  29084810 agtgt 29084806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29898080 - 29897865
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| ||||||||||| || ||||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| |  | | |       
T  29898080 tctcatcgactagcttcaacgcgtaagagaatttccccaatttacacaaaccatcgataagagaattgtaagttaccacatcaggaattagctttctaca 29897981  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||| |||||||||||| |||||||||  | ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||     
T  29897980 atgcatttcttcaaagagattcatggcttcatcggtcattttactcttacaaaacccattaatcaagatattgtaactgtgaatatcaggattcactcct 29897881  T
Q  201 ctctgagacatagtgt 216  Q
    | ||||| ||||||||    
T  29897880 ccctgagccatagtgt 29897865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 29887300 - 29887126
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| |  | | |       
T  29887300 tctcatcgactagcttcaaagcataagagattttccccgatttgcacaaaccattgataagggaattgtaagttaccacatcaggaattagttttctaca 29887201  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgta 175  Q
    ||||||||||| |||||||||||| |||||||||  | |||||||||||||||| |||| ||||| |||||||||    
T  29887200 atgcatttcttcaaagagattcatggcttcatcggtcattttaatcttacaaaatccattaatcatgatattgta 29887126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 30127059 - 30127233
Alignment:
Q  9 actagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcattt 108  Q
    ||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||||||||| | ||||   |||||||    
T  30127059 actagattcaaagcatgagagattttctccgatttacagaaaccatcaataagggaactataagttaccacatcaggaataatttttttgcattgcattt 30127158  T
Q  109 ctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaa 183  Q
    ||| ||||||||| || |||||| | ||| ||||||||||||||||||||| ||||| ||||||||| |||||||    
T  30127159 cttcaaagagattaatggcttcacccacccttttaatcttacaaaacccattaatcatgatattgtagctttgaa 30127233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 29946438 - 29946271
Alignment:
Q  3 tcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgat 102  Q
    ||||| || |||| ||||||||| |||||| |||||||| | |||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||  ||    
T  29946438 tcatcgacaagctccaaagcatatgagattctccccgatctgcacaaaccattaataagggaattgtaagttaccacattaggaaaaatttgtttgcaat 29946339  T
Q  103 gcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagata 170  Q
    ||||||||| |||||||||||| |||||||| ||| |||||||||||||||| |||| ||||| ||||    
T  29946338 gcatttcttcaaagagattcatggcttcatccaccattttaatcttacaaaatccattaatcatgata 29946271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 24890242 - 24890400
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| | | |       
T  24890242 tctcatcgactagcttcaaagcataaaagattctccccaatttacacaaaccatcaataagggaactgtaagttaccacattaggaataatttttctaca 24890341  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccat 159  Q
    | ||||||||| ||||||||| || |||||||| ||| |||||||||||||||| ||||    
T  24890342 acgcatttcttcaaagagatttatggcttcatccaccattttaatcttacaaaatccat 24890400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 30061991 - 30062109
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| | ||||      
T  30061991 tctcatcgactagcttcaaagcataagagattttccccgatttacaaaaaccatcaataagggaattgtaagctaccacatcgggaataatgtttttgca 30062090  T
Q  101 atgcatttctttaaagaga 119  Q
    ||||||||||| |||||||    
T  30062091 atgcatttcttcaaagaga 30062109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 29889722 - 29889569
Alignment:
Q  12 agcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctt 111  Q
    |||| |||| |||| |||||| |||| ||||| |  |||||||||||||| ||||||||||| ||||||| ||||||||| | ||||  |||||||||||    
T  29889722 agctgcaaaacatatgagattatccctgatttgcttaaaccatcaataagagaattgtaagtcaccacattaggaataatgtttttgcaatgcatttctt 29889623  T
Q  112 taaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatca 165  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  29889622 taaagagattcatggcttcatcgacttttttaatcttacaaaacccattaatca 29889569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 24730858 - 24730694
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| |||||||||||  || |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||| | | |       
T  24730858 tctcatcgactagcttcaacacacaagagattttccccaatttacccaaaccatcaataagggaattgtaagttaccacattaggaataatttttctaca 24730759  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatca 165  Q
    | ||||||||| ||||||||| | ||||||||| ||| ||||||||||||| || |||| |||||    
T  24730758 acgcatttcttcaaagagatttacagcttcatccaccattttaatcttacataatccattaatca 24730694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 29929265 - 29929061
Alignment:
Q  12 agcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctt 111  Q
    |||| ||||||||| |||||| |||| ||||| ||||| ||||| ||||||| | | ||||||| ||||||||||| ||| |||||||||||||||||||    
T  29929265 agctgcaaagcatatgagattctccctgatttgcacaatccatcgataagggcactataagttatcacatcaggaaaaatttgtttgtgatgcatttctt 29929166  T
Q  112 taaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacat 211  Q
    | || || ||||| |||||||| ||| |||||||||||||||| |||| ||||| |||| |||| || | |  || || | |||||||||| ||||||||    
T  29929165 tgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatactgtagctcttagcattagcagtcactcccctatgagacat 29929066  T
Q  212 agtgt 216  Q
    |||||    
T  29929065 agtgt 29929061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 29882422 - 29882223
Alignment:
Q  17 caaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaag 116  Q
    ||||||||| || ||| | || ||||| ||||| ||||| ||||||| | | ||||||| ||||||||||| ||| |||||||||||||||||||| ||     
T  29882422 caaagcatatgatattcttccagatttgcacaatccatcgataagggcactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaa 29882323  T
Q  117 agattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacatagtgt 216  Q
    || ||||| |||||||| ||| |||||||||||||||| |||| ||||| |||| |||| || |||| || || | |||||||||| |||||||||||||    
T  29882322 agtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactcccctatgagacatagtgt 29882223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 29909578 - 29909379
Alignment:
Q  17 caaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaag 116  Q
    ||||||||| || ||| | || ||||| ||||| ||||| ||||||| | | ||||||| ||||||||||| ||| |||||||||||||||||||| ||     
T  29909578 caaagcatatgatattcttccagatttgcacaatccatcgataagggcactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaa 29909479  T
Q  117 agattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacatagtgt 216  Q
    || ||||| |||||||| ||| |||||||||||||||| |||| ||||| |||| |||| || |||| || || | |||||||||| |||||||||||||    
T  29909478 agtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactcccctatgagacatagtgt 29909379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 24263764 - 24263970
Alignment:
Q  17 caaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaag 116  Q
    ||||||||| || ||| | || ||||| ||||| ||||||||||||||||| ||||||| ||||| ||||| ||| |||||||||||||||||||| ||     
T  24263764 caaagcatatgatattcttccagatttgcacaatccatcaataagggaattataagttatcacattaggaaaaatttgtttgtgatgcatttctttgaaa 24263863  T
Q  117 agattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacatagtgt 216  Q
    || ||||| |||| ||| ||| |||||||||||||||| |||| |||||  |||||||| ||  ||| |  || | |||||||||| |||||||||||||    
T  24263864 agtttcatggcttgatccaccattttaatcttacaaaatccattaatcacaatattgtagctccgaacagtagcagtcactcccctatgagacatagtgt 24263963  T
Q  217 ataatat 223  Q
     ||||||    
T  24263964 ttaatat 24263970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 30999934 - 31000098
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||| ||||| | ||||||| | | |       
T  30999934 tctcatcgactagcttcagagcataagagattctccccgatttacacaaaccatcaataaggaaactgtaaattaacacattacgaataatttttctaca 31000033  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatca 165  Q
    | ||||||||| ||||||||| || |||||||| ||| |||||||||| ||||| |||| |||||    
T  31000034 acgcatttcttcaaagagatttatggcttcatccaccattttaatcttgcaaaatccattaatca 31000098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 24271959 - 24272158
Alignment:
Q  17 caaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaag 116  Q
    ||||||||| || ||| | || ||||| ||||| ||||||||||||||| | ||||||| ||||| ||||| ||| |||||||||||||||||||| ||     
T  24271959 caaagcatatgatattcttccagatttgcacaatccatcaataagggaactataagttatcacattaggaaaaatttgtttgtgatgcatttctttgaaa 24272058  T
Q  117 agattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacatagtgt 216  Q
    || ||||| |||| ||| ||| |||||||||||||||| | || ||||| |||| |||| ||  ||| || ||   |||||||||| |||||||||||||    
T  24272059 agtttcatggcttgatccaccattttaatcttacaaaatctattaatcatgatactgtagctccgaacattagcggtcactcccctatgagacatagtgt 24272158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 29903180 - 29903037
Alignment:
Q  84 ggaataatatgtttgtgatgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaaccc----atcaatcaagatattgtaactt 179  Q
    |||| ||| |||||| ||||||||||| | || || ||||| |||||||| ||| |||||||||||||||||||    || ||||| ||| ||||| ||     
T  29903180 ggaaaaatttgtttgcgatgcatttctctgaaaagtttcatggcttcatccaccattttaatcttacaaaacccgttaattaatcatgatgttgtagctg 29903081  T
Q  180 tgaatatcaggattcactcccctctgagacatagtgtataatat 223  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  29903080 tgaatatcaggattcactcccctctgagacatagtgtttaatat 29903037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 25451121 - 25450968
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| || ||||||||||||| ||  ||| || ||||||| ||||||||||||| ||||||| |||||||||||||||||||||  || ||||||      
T  25451121 tctcatcgacaagcttcaaagcattaggaattctctccgatttgcacaaaccatcaacaagggaactgtaagttaccacatcaggaaatatttgtttgga 25451022  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaa 154  Q
     |||||||||| ||| || ||| | |||||||| ||| ||||||||||||||||    
T  25451021 ctgcatttcttcaaaaagtttcctggcttcatccaccattttaatcttacaaaa 25450968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29211389 - 29211445
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaa 57  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  29211389 tctcatccactagcttcaaagcataagagattttccccgatttacaaaaaacatcaa 29211445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29876828 - 29876613
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    |||||||||| |||| |||||| |  |  ||| |||||||||| || |||||||||||||||||| | |||| || |  ||||||||| || | |||       
T  29876828 tctcatcaacaagctccaaagcctgtggaattctccccgatttgcaaaaaccatcaataagggaactataagctatcgtatcaggaattatttctttaca 29876729  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    |||||||||||  ||||||||||| |||||||| | | |||||| ||||||||| |||| ||||| |||| |||| ||  ||| ||  | | ||||||||    
T  29876728 atgcatttcttggaagagattcattgcttcatccatcattttaaccttacaaaatccattaatcatgatactgtagctccgaacatttgcagtcactccc 29876629  T
Q  201 ctctgagacatagtgt 216  Q
    ||||||  ||||||||    
T  29876628 ctctgaaccatagtgt 29876613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 15727229 - 15727335
Alignment:
Q  45 cacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagattcatagcttcatcgacctttttaa 144  Q
    |||||||||||||| || |||||||||||||||  ||||||| ||||   ||||  | ||||||| ||||||||| |||  |||||||||| | ||||||    
T  15727229 cacaaaccatcaatgagagaattgtaagttaccttatcaggagtaattcctttgctacgcatttcattaaagagactcaaggcttcatcgatcattttaa 15727328  T
Q  145 tcttaca 151  Q
    |||||||    
T  15727329 tcttaca 15727335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 30154403 - 30154302
Alignment:
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||||||||||| ||| ||||||||| ||| |||||| |||||| || |||| ||||| || | |||| ||  ||| || |||| ||||||||    
T  30154403 atgcatttctttaaagagaatcacagcttcatccaccattttaaccttacataatccattaatcatgacactgtagctacgaacattaggagtcactccc 30154304  T
Q  201 ct 202  Q
    ||    
T  30154303 ct 30154302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 15715083 - 15715171
Alignment:
Q  102 tgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcagg 190  Q
    ||||||||||| ||||||||||  |||||||| ||| ||||||||||||| || |||| ||| | |||| |||| || |||| ||||||    
T  15715083 tgcatttctttgaagagattcaaggcttcatcaaccattttaatcttacataagccattaataatgatagtgtagctgtgaacatcagg 15715171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 30053330 - 30053215
Alignment:
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    |||||||||||| || || |||| ||||||||| ||| ||||| ||||||| || |||| ||||| || | |||| || |||| || |||| ||||||||    
T  30053330 atgcatttctttgaaaagtttcacagcttcatccaccattttattcttacataatccattaatcatgacaatgtagctatgaacattaggagtcactccc 30053231  T
Q  201 ctctgagacatagtgt 216  Q
    ||  |||| |||||||    
T  30053230 cttagagaaatagtgt 30053215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 16702242 - 16702316
Alignment:
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgta 175  Q
    |||||||||| | ||||||||||  |||||||| ||| ||||||||||||| || |||| ||| | |||||||||    
T  16702242 atgcatttctgtgaagagattcaaggcttcatcaaccattttaatcttacataatccattaataaggatattgta 16702316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 24934570 - 24934469
Alignment:
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    |||||||||||| |||||||| |  |||||||| ||| ||||| |||| || |  |||| |||||  ||| |||| ||||||| ||||||| ||||||||    
T  24934570 atgcatttctttgaagagattaacggcttcatccaccattttagtcttgcatagtccattaatcataatactgtagctttgaacatcaggagtcactccc 24934471  T
Q  201 ct 202  Q
    ||    
T  24934470 ct 24934469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 4140 - 3929
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | | ||      
T  4140 tctcatcgactagcttcaaagcataagagattttccccgatttacacaaaccatcgataagggaattgtaagttaccacattaggaataatttttctgca 4041  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactccc 200  Q
    ||||||||||| |||||||||||| ||| |||||  | ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  4040 atgcatttcttcaaagagattcatggctgcatcggtcattttaatcttacaaaacccattaatcaagatattgtaactctgaatatcaggattcactccc 3941  T
Q  201 ctctgagacata 212  Q
    | ||||| ||||    
T  3940 ccctgagccata 3929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 53600 - 53807
Alignment:
Q  9 actagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcattt 108  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53600 actagctggaaagcataagatattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcattt 53699  T
Q  109 ctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgaga 208  Q
    || | ||||| ||||| |||| ||| |||||||||||||||||||| |||| ||||| ||||||||| || |||| || || | ||||||||||||||||    
T  53700 ctatgaagagtttcatggctttatccacctttttaatcttacaaaatccattaatcatgatattgtagctatgaacattagcagtcactcccctctgaga 53799  T
Q  209 catagtgt 216  Q
    ||||||||    
T  53800 catagtgt 53807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 24219245 - 24219446
Alignment:
Q  15 ttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaa 114  Q
    ||||||||||| |||||| | |||||||| |||||||||||||||||||||||||| || |||||||| |||| ||| ||||||  ||||||||||| ||    
T  24219245 ttcaaagcatatgagattcttcccgatttgcacaaaccatcaataagggaattgtacgtcaccacatcgggaaaaatttgtttgcaatgcatttcttcaa 24219344  T
Q  115 agagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacatagt 214  Q
    |||| ||||| |||||||| ||| |||||||||||||||| |||  ||||| |||| ||||||| ||||  ||||||  ||||||  | |||| ||||||    
T  24219345 agagtttcatggcttcatccaccattttaatcttacaaaatccactaatcatgatactgtaactatgaacgtcaggagccactccaatttgagccatagt 24219444  T
Q  215 gt 216  Q
    ||    
T  24219445 gt 24219446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 33997943 - 33997769
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    |||||||||| |||| ||||| |   |||||||||||  |||| ||||||||||||||||||  |||||||||||||||||||||| |||| | |||       
T  33997943 tctcatcaacaagctccaaagaagttgagattttccctaatttgcacaaaccatcaataaggatattgtaagttaccacatcaggattaatctttttcca 33997844  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgta 175  Q
    |||||| ||||||||||||||||| |||||||| ||| ||||  |||| || || |||| ||| | |||||||||    
T  33997843 atgcatctctttaaagagattcatggcttcatccaccctttttttcttgcacaatccattaataatgatattgta 33997769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 11991313 - 11991151
Alignment:
Q  3 tcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgat 102  Q
    |||||||| |||| | ||||||| |||||| |||| ||||| |||||||||||||| || ||||| |||||||||  |||||||  |||   ||||   |    
T  11991313 tcatcaacaagctcccaagcataggagattctccctgatttgcacaaaccatcaatgagagaattataagttaccttatcaggagcaattcctttgaact 11991214  T
Q  103 gcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatca 165  Q
    |||| || ||||||||| |||  |||||||| ||| |||||||||||||||| |||| |||||    
T  11991213 gcatatcattaaagagactcaaggcttcatcaaccattttaatcttacaaaatccattaatca 11991151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16351053 - 16350977
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttacc 77  Q
    |||||||||| |||| | ||||||| | |||| |||| | ||| |||||||||||||| || |||||||||||||||    
T  16351053 tctcatcaacaagctcccaagcataggggattctccctgctttgcacaaaccatcaatgagagaattgtaagttacc 16350977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 22330 - 22131
Alignment:
Q  17 caaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaag 116  Q
    ||||||||| || ||| | || ||||| ||||| ||||| ||||||||| | ||||||| ||||||||||| ||| |||||||||||||||||||| ||     
T  22330 caaagcatatgatattcttccagatttgcacaatccatcgataagggaactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaa 22231  T
Q  117 agattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccctctgagacatagtgt 216  Q
    || ||||| |||||||| ||| |||||||||||||||| |||| ||||| ||||||||| || |||| || || | |||| ||||| |||||||||||||    
T  22230 agtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatattgtagctctgaacattagcagtcacacccctatgagacatagtgt 22131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 15062910 - 15063046
Alignment:
Q  39 gatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagattcatagcttcatcgacct 138  Q
    ||||||||||||||||||| |||||||||||||||||||||||  |||| ||| |||||   ||||||||||| |||||| ||||| |||||||| |||     
T  15062910 gatttacacaaaccatcaacaagggaattgtaagttaccacatttggaaaaatttgtttacaatgcatttcttcaaagagcttcatggcttcatctacca 15063009  T
Q  139 ttttaatcttacaaaacccatcaatcaagatattgta 175  Q
    |||||||||||||||| |||| ||||| |||| ||||    
T  15063010 ttttaatcttacaaaatccattaatcatgatactgta 15063046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 10130114 - 10129939
Alignment:
Q  27 gagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagattcatag 126  Q
    |||||| |||| ||||| ||||| ||||||||||||||| | ||||||| |  ||||||||  |  ||| ||   ||||||||||| |||||||  ||||    
T  10130114 gagattctccctgatttgcacaagccatcaataagggaactataagttatcgtatcaggaacgagttgtctgccttgcatttctttgaagagatcaatag 10130015  T
Q  127 cttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccct 202  Q
    ||||||| ||| |||||||||||||||| |||| ||||| |||| |||||||||||| ||| | | ||||||||||    
T  10130014 cttcatccaccattttaatcttacaaaatccattaatcatgatactgtaactttgaacatcggcaatcactcccct 10129939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 4260346 - 4260487
Alignment:
Q  34 tccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagattcatagcttcatc 133  Q
    |||| ||||| ||||||||||||||||||| || |||||||||||| |||||||  || |||||| || ||||||||| |||||| || || ||||||||    
T  4260346 tcccggatttgcacaaaccatcaataagggtatggtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 4260445  T
Q  134 gacctttttaatcttacaaaacccatcaatcaagatattgta 175  Q
     ||| |||| || ||||||||  ||| ||||| |||||||||    
T  4260446 caccattttcattttacaaaattcattaatcatgatattgta 4260487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 4263968 - 4264109
Alignment:
Q  34 tccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagattcatagcttcatc 133  Q
    |||| ||||| ||||||||||||||||||| || |||||||||||| |||||||  || |||||| || ||||||||| |||||| || || ||||||||    
T  4263968 tcccggatttgcacaaaccatcaataagggtatggtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 4264067  T
Q  134 gacctttttaatcttacaaaacccatcaatcaagatattgta 175  Q
     ||| |||| || ||||||||  ||| ||||| |||||||||    
T  4264068 caccattttcattttacaaaattcattaatcatgatattgta 4264109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 17251278 - 17251184
Alignment:
Q  39 gatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagattcatagcttcatc 133  Q
    ||||| ||||||||||||||||| ||| | |||| ||| ||||||||||| | || || || | ||||  ||| |||||||| ||||||||||||    
T  17251278 gatttgcacaaaccatcaataagagaactataagctactacatcaggaatcacattttcgttacgcatcccttcaaagagatccatagcttcatc 17251184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 19490220 - 19490052
Alignment:
Q  34 tccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagattcatagcttcatc 133  Q
    |||||||||| || ||||||| |||||| ||| | |||||||  |||||| |  | |||| | ||  ||||||||||| ||||||| | |  ||||||||    
T  19490220 tccccgatttgcataaaccattaataagagaactataagttattacatcaagcgtcatatttgtggaatgcatttcttcaaagagacttaccgcttcatc 19490121  T
Q  134 gacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcccct 202  Q
     | | |||| |||||||| || |||| ||||| |||| | || || |||||||||||| ||| ||||||    
T  19490120 caacattttcatcttacataatccattaatcatgatagtatagctctgaatatcaggagtcattcccct 19490052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 8980 - 8834
Alignment:
Q  19 aagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagag 118  Q
    |||||| ||| ||| |||| ||||| ||||||||||||||||| ||| |||||||||||  || ||| ||||| | ||||   ||||||||||||||||     
T  8980 aagcatgagaaattctccctgatttgcacaaaccatcaataagagaactgtaagttaccgtattagggataatctttttgctttgcatttctttaaagaa 8881  T
Q  119 attcatagcttcatcgacctttttaatcttacaaaacccatcaatca 165  Q
    || ||| |||||||||| |  |||| ||||||| ||||||| |||||    
T  8880 atccatggcttcatcgatcaatttattcttacacaacccattaatca 8834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3236 - 3151
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcagga 86  Q
    |||||||||| |||| | ||||||| |||||| |||| ||||| |||||||||||||| || |||||||||||||||  |||||||    
T  3236 tctcatcaacaagctcccaagcataggagattctcccagatttgcacaaaccatcaattagagaattgtaagttaccgtatcagga 3151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 27336 - 27206
Alignment:
Q  21 gcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagat 120  Q
    |||| ||||||| || | ||||| |||||||||||||| || ||| |||||||||||  ||| ||| ||||   ||||  | ||||||| |||||||||     
T  27336 gcatgagagattctctctgatttgcacaaaccatcaatgagagaactgtaagttaccttatcgggagtaattcctttgcaacgcatttcattaaagagac 27237  T
Q  121 tcatagcttcatcgacctttttaatcttaca 151  Q
    |||  |||||||||||| |||||||||||||    
T  27236 tcaaggcttcatcgaccattttaatcttaca 27206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 140297 - 140132
Alignment:
Q  5 atcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgc 104  Q
    |||||| |||| | ||||||| | |||| |||| ||||| || ||||||||||| || |||||||||||||||  || ||||  |||   | || || ||    
T  140297 atcaacaagctcccaagcataggggattctccctgatttgcataaaccatcaatgagagaattgtaagttaccgtattaggagcaattcctctgcgacgc 140198  T
Q  105 atttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagata 170  Q
    ||||| | ||||||| |||  |||||||| ||| |||||||||||||||| |||| ||||| ||||    
T  140197 atttcatcaaagagactcaaggcttcatcaaccattttaatcttacaaaatccattaatcatgata 140132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 137377 - 137206
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    ||||||| || |||||| ||||||  |||||| | || ||||| |||||||||||||| || |||||||||||||||  ||  |||  ||| | ||||      
T  137377 tctcatcgacaagcttccaagcatgggagattctacctgatttgcacaaaccatcaatgagagaattgtaagttaccgtattgggagaaat-tctttgac 137279  T
Q  101 at-gcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatatt 172  Q
    |  ||||||| ||||||||| ||| |||||||| |||| ||||||||||||| || |||| ||||| ||||||    
T  137278 aacgcatttcattaaagagactcaaagcttcattgaccattttaatcttacagaatccattaatcatgatatt 137206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 121567 - 121617
Alignment:
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttaca 151  Q
    ||||||||||||||||| |||||  |||||||| ||| |||||||||||||    
T  121567 atgcatttctttaaagaaattcaaggcttcatcaaccattttaatcttaca 121617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 104734 - 104810
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttacc 77  Q
    ||||||| || |||| | ||||| |||||| | |||| ||||| |||||||||||||| || ||| |||||||||||    
T  104734 tctcatccacaagctcccaagcacaagagaatctcccagatttgcacaaaccatcaatgagagaactgtaagttacc 104810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 121496 - 121552
Alignment:
Q  21 gcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttacc 77  Q
    |||| ||||||| |||| ||||| |||||| |||||||||| ||| |||||||||||    
T  121496 gcatgagagattctccctgatttgcacaaagcatcaataagagaactgtaagttacc 121552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 1236 - 1366
Alignment:
Q  21 gcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagat 120  Q
    |||| ||| |||||||| | ||| |||||||||||||| || |||||||||||||||  |||||||  |||   | ||  |  |||||| ||||||||||    
T  1236 gcatgagaaattttccctgctttgcacaaaccatcaatgagagaattgtaagttaccttatcaggagcaattcctctgcaacacatttcattaaagagat 1335  T
Q  121 tcatagcttcatcgacctttttaatcttaca 151  Q
    | |  |||||||||||| |||||||||||||    
T  1336 ttaaggcttcatcgaccattttaatcttaca 1366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 3643040 - 3642891
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtg 100  Q
    |||||||||| |||| | ||||||| || ||| | ||  |||| |||||||||||||| || |||||||||||||||  |||||||  |||   ||||      
T  3643040 tctcatcaacaagctgccaagcataggatattcttcctaatttgcacaaaccatcaatgagagaattgtaagttaccgtatcaggagcaattcctttgca 3642941  T
Q  101 atgcatttctttaaagagattcatagcttcatcgacctttttaatcttac 150  Q
    |  |||||| ||||||||| | |  |||||||||||| ||||||||||||    
T  3642940 acacatttccttaaagagacttaaggcttcatcgaccattttaatcttac 3642891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 13904694 - 13904782
Alignment:
Q  102 tgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcagg 190  Q
    ||||||||||| ||||||||||  |||||||| ||| ||||||||||||| || |||| ||| | |||| |||| || |||| ||||||    
T  13904694 tgcatttctttgaagagattcaaggcttcatcaaccattttaatcttacataagccattaataatgatagtgtagctgtgaacatcagg 13904782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 43383 - 43452
Alignment:
Q  103 gcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatatt 172  Q
    ||||||| ||||||||| | |  ||||||| |||| |||||||||||||||| |||| ||||| ||||||    
T  43383 gcatttcattaaagagactgaaggcttcattgaccattttaatcttacaaaatccattaatcatgatatt 43452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 126119 - 126195
Alignment:
Q  1 tctcatcaactagcttcaaagcataagagattttccccgatttacacaaaccatcaataagggaattgtaagttacc 77  Q
    |||||||||| || | | |||||||||||  | |||| ||||| |||||||||||||| || ||| |||||||||||    
T  126119 tctcatcaacaaggtcccaagcataagagtatctcccagatttgcacaaaccatcaatgagcgaactgtaagttacc 126195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University