View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11500_low_55 (Length: 228)
Name: NF11500_low_55
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_55 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2351491 - 2351280
Alignment:
| Q |
1 |
cttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2351491 |
cttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaatt |
2351392 |
T |
|
| Q |
101 |
agccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2351391 |
agccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgta |
2351292 |
T |
|
| Q |
201 |
atgtcaaatgtt |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2351291 |
atgtcaaatgtt |
2351280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 2331183 - 2330978
Alignment:
| Q |
3 |
tgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaattag |
102 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| ||||| || ||||||||||| | ||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
2331183 |
tgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaattccaaaccaaattag |
2331084 |
T |
|
| Q |
103 |
ccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgtaat |
202 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||| | ||||||||||||||||||||||||||||| || ||||| |
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|
| T |
2331083 |
ccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcatcatctttatctctttacttcctgtaat |
2330984 |
T |
|
| Q |
203 |
gtcaaa |
208 |
Q |
| |
|
|||||| |
|
|
| T |
2330983 |
gtcaaa |
2330978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2294302 - 2294095
Alignment:
| Q |
1 |
cttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| || |
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|
| T |
2294302 |
cttgcaatggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagtt |
2294203 |
T |
|
| Q |
101 |
agccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgta |
200 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| ||||||||| ||||| || ||| | ||||| ||||||||||||||||||||||| || ||| |
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|
| T |
2294202 |
agccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgta |
2294103 |
T |
|
| Q |
201 |
atgtcaaa |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
2294102 |
atgtcaaa |
2294095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 2310633 - 2310441
Alignment:
| Q |
1 |
cttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaatt |
100 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
2310633 |
cttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaatt |
2310534 |
T |
|
| Q |
101 |
agccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttact |
193 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| ||||||||| ||||| || ||| | ||||| ||||||||||||||||||||||| |
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|
| T |
2310533 |
agccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttact |
2310441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2327470 - 2327263
Alignment:
| Q |
1 |
cttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
2327470 |
cttgcaatggatttttcatcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaatt |
2327371 |
T |
|
| Q |
101 |
agccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgta |
200 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||| ||||| |||||||||||| | ||||| ||||||||||| |||||||||||||| ||| |
|
|
| T |
2327370 |
agccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaaacggcatcatcttgatctctttactccctgta |
2327271 |
T |
|
| Q |
201 |
atgtcaaa |
208 |
Q |
| |
|
|| ||||| |
|
|
| T |
2327270 |
atatcaaa |
2327263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 2321617 - 2321422
Alignment:
| Q |
1 |
cttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||| || |||| || ||||| ||||||||||||||| || |
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|
| T |
2321617 |
cttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagtt |
2321518 |
T |
|
| Q |
101 |
agccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccc |
196 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| ||||||||| |||||||| ||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
2321517 |
agccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccc |
2321422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2303915 - 2303708
Alignment:
| Q |
1 |
cttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2303915 |
cttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctggaagcttccaatcgaaattccaaaccaaatt |
2303816 |
T |
|
| Q |
101 |
agccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgta |
200 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||| | | ||||| |||||||| || | |||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
2303815 |
agccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaacggcatcatctttatctccttactccctgta |
2303716 |
T |
|
| Q |
201 |
atgtcaaa |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
2303715 |
atgtcaaa |
2303708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41127500 - 41127290
Alignment:
| Q |
1 |
cttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccacct---tctggaaccttccaatcgaaattccaaaccaa |
97 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||| |||||||||||||||||||| ||| || ||| ||| |||||||| |||||||| ||||| |
|
|
| T |
41127500 |
cttgcagtggatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttccaattaaaattccagaccaa |
41127401 |
T |
|
| Q |
98 |
attagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactcccc |
197 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
41127400 |
attagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatctttatctctttagtcccg |
41127301 |
T |
|
| Q |
198 |
gtaatgtcaaa |
208 |
Q |
| |
|
||||| ||||| |
|
|
| T |
41127300 |
gtaatatcaaa |
41127290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 26507108 - 26507056
Alignment:
| Q |
5 |
caatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacat |
57 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||| |||||||| ||||||||||||| |
|
|
| T |
26507108 |
caatggatatttcatcaccatagtaaattcctgtttttctgacaaatcaacat |
26507056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 15176287 - 15176409
Alignment:
| Q |
75 |
ttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggca |
174 |
Q |
| |
|
||||| || |||||| |||| ||||| || ||||| ||||||||||| | ||| |||||| ||| || ||||| |||||||| || | |||||||||| |
|
|
| T |
15176287 |
ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca |
15176386 |
T |
|
| Q |
175 |
tcatctttatctctttactcccc |
197 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15176387 |
tcatctttatctctttactcccc |
15176409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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