View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_57 (Length: 213)
Name: NF11500_low_57
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 45569673 - 45569491
Alignment:
| Q |
13 |
agcaaaggtgttgttgtcatttcttggaaggggatcctcatattgtgctaagatgctttcatttacagagaagttgacaagctgctgccgcacaccaaac |
112 |
Q |
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| T |
45569673 |
agcaaaggtgttgttgtcatttcttggaaggggatcctcatattgtgctaagatgctttcatttacagagaagttgacaagctgctgccgcacaccaaac |
45569574 |
T |
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| Q |
113 |
ttgtccccagccactttacctagatttttgttgctttcagacttattagtagctcatcttgtgcactgcttgtactcaagtgt |
195 |
Q |
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| T |
45569573 |
ttgtccccagccactttacctagatttttgttgctttcagacttattagtagctcatcttgtgcactgcttgtactcaagtgt |
45569491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 45175665 - 45175710
Alignment:
| Q |
22 |
gttgttgtcatttcttggaaggggatcctcatattgtgctaagatg |
67 |
Q |
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| T |
45175665 |
gttgttgtcatttattcgaaggggatcctcatattgtggtaagatg |
45175710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 44642408 - 44642373
Alignment:
| Q |
34 |
tcttggaaggggatcctcatattgtgctaagatgct |
69 |
Q |
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| T |
44642408 |
tcttggaaggggatcctcatactgtgctaagatgct |
44642373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 44687126 - 44687068
Alignment:
| Q |
136 |
atttttgttgctttcagacttattagtagctcatcttgtgcactgcttgtactcaagtg |
194 |
Q |
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| T |
44687126 |
atttttgttgctgtcacaattattagtagctcatcttctgtactgcatgtgctcaagtg |
44687068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 9798138 - 9798093
Alignment:
| Q |
22 |
gttgttgtcatttcttggaaggggatcctcatattgtgctaagatg |
67 |
Q |
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| T |
9798138 |
gttgttgtcattttttcgaaggggatcctcatattgtggtaagatg |
9798093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 42416233 - 42416273
Alignment:
| Q |
155 |
ttattagtagctcatcttgtgcactgcttgtactcaagtgt |
195 |
Q |
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| T |
42416233 |
ttattagtagctcatcttgtgcactgcttgtatttaagtgt |
42416273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 8829948 - 8829837
Alignment:
| Q |
83 |
aagttgacaagctgctgccgcacaccaaacttgtccccagccactttacctagatttttgttgctttcagacttattagtagctcatcttgtgcactgct |
182 |
Q |
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| T |
8829948 |
aagttaacaagctgctaccacacaccaaatttggctccagcaacataaatcagatttttgttgatgccacagttattagtagctcatcttgtgcagtgtt |
8829849 |
T |
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| Q |
183 |
tgtactcaagtg |
194 |
Q |
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| T |
8829848 |
tgttctcaagtg |
8829837 |
T |
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