View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11500_low_58 (Length: 207)
Name: NF11500_low_58
Description: NF11500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11500_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 37497947 - 37498127
Alignment:
| Q |
13 |
agagacagtgacgcaattagcatatcaactatcttacctagcagacatacaatcacaatcagaaaatgcagctggctttagttaaaagaaagatgaaacg |
112 |
Q |
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| T |
37497947 |
agagacagtgacgcaattagcatatcaactagcttacctagcagacatacaatcacaatcagaaaatgcagctggctttagttaaaagaaagatgaaacg |
37498046 |
T |
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| Q |
113 |
cagtcaatggatgaagatgaacacaaatattgatattgttactataattatgtgttaatttcggttgacatttgttacttt |
193 |
Q |
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| T |
37498047 |
cagtcaatggatgaagatgaacacaaatattgatattgttactataattatgtgttaatttcggttgacatttgttacttt |
37498127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 37504585 - 37504691
Alignment:
| Q |
88 |
ctttagttaaaagaaagatgaaacgcagtcaatggatgaagatgaacacaaata-ttgatattgttactataattatgtgttaatttcggttgacatttg |
186 |
Q |
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| T |
37504585 |
ctttagttaaaagaaagatcaaactcaatcaatgaatgaagacaaacataaattgttgatatttttaatataattatgtgttaatttcagttaacatttg |
37504684 |
T |
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| Q |
187 |
ttacttt |
193 |
Q |
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||||||| |
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| T |
37504685 |
ttacttt |
37504691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 37500603 - 37500752
Alignment:
| Q |
26 |
caattagcatatcaactatctt-acctagcagacatacaatcacaatcagaaaatgcagctggctttagttaaaagaaagatgaaacgcagtcaatggat |
124 |
Q |
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|||||| || |||||||| ||| |||||||||||| | || |||||| |||| || || || |||||||||||| || |||| |||| || ||||||||| |
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| T |
37500603 |
caattaacagatcaactagctttacctagcagacaaaaaaacacaattagaagatacaactagctttagttaaaggacagatcaaacacaatcaatggat |
37500702 |
T |
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| Q |
125 |
gaagatgaa--cacaaatattgatattgttactataattatgtgttaatt |
172 |
Q |
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| T |
37500703 |
gaatatgaaacctaaattgtttatgttgttactataattatgtgttaatt |
37500752 |
T |
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